request for simulation dataset mentioned in the paper

suhrig / arriba

Fast and accurate gene fusion detection from RNA-Seq data

Other

226 stars 50 forks source link

request for simulation dataset mentioned in the paper #200

Closed acloop62hz closed 1 year ago

acloop62hz commented 1 year ago

Hi @suhrig , I'm very interested in this software and I'm trying to rerun Arriba on the simulation dataset from Jia. et al mentioned in the paper. I have tried to access the dataset from Jia's paper but unfortunately the link seems to be broken. I hope you don't mind me asking, but would it be possible for you to share a copy of the dataset with me? I would really appreciate your help and generosity.

Thank you very much for your time and attention. Yuxuan

suhrig commented 1 year ago

The files are still available on the Internet Archive (bless this site!): https://web.archive.org/web/20160106213835/http://public.genomics.org.cn/BGI/soap/SOAPfuse/simulate_seq-data.for.SOAPfuse.tar.gz

The SourceForge page of SOAPfuse is also still up and has some info on the benchmark dataset: https://sourceforge.net/p/soapfuse/wiki/Performance_Evaluation/

acloop62hz commented 1 year ago

There seems to be network error when downloading the dataset. I guess Internet Archive lost the dataset part. Thanks so much anyway! I really appreciate your help.