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suiji / Arborist

Scalable decision tree training and inference.
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Compile Error Python #34

Open kroscek opened 6 years ago

kroscek commented 6 years ago

I have anaconda2 (Cython 0.26 up-to-date) and Ubuntu 14.04 (gcc 4.9). So I followed installation instruction and receive error: In file included from ../ArboristCore/sample.cc:18:0: pyborist/callback.h:20:17: error: initializing argument 2 of 'static void CallBack::SampleInit(unsigned int, double*, bool)' [-fpermissive] static void SampleInit(unsigned int _nRow, ^ error: command 'gcc' failed with exit status 1

suiji commented 6 years ago

Thank you for reporting this.

Reproduces on Fedora 26, gcc 7.2.1, cython-0.27.2. Looks like a qualifier mismatch. Will advise when repair is on Github.

suiji commented 6 years ago

Appears to be repaired on this end, with changes now on Github. Please advise if you encounter additional problems.

suiji commented 6 years ago

Closing, but please feel to re-open if dissatisfied.

kroscek commented 6 years ago

@suiji I downloaded the latest version but new error message pop-up:

Cloning into 'Arborist'... remote: Counting objects: 2469, done. remote: Total 2469 (delta 0), reused 0 (delta 0), pack-reused 2469 Receiving objects: 100% (2469/2469), 1.22 MiB | 416.00 KiB/s, done. Resolving deltas: 100% (1839/1839), done. Checking connectivity... done. lemma@lemma:~$ cd ArboristBridgePy bash: cd: ArboristBridgePy: No such file or directory lemma@lemma:~$ cd Arborist lemma@lemma:~/Arborist$ cd ArboristBridgePy lemma@lemma:~/Arborist/ArboristBridgePy$ python setup.py install Compiling pyborist/cyleaf.pyx because it changed. Compiling pyborist/cytrain.pyx because it changed. Compiling pyborist/cyforest.pyx because it changed. Compiling pyborist/cyrowrank.pyx because it changed. Compiling pyborist/cypredict.pyx because it changed. [1/5] Cythonizing pyborist/cyforest.pyx [2/5] Cythonizing pyborist/cyleaf.pyx [3/5] Cythonizing pyborist/cypredict.pyx [4/5] Cythonizing pyborist/cyrowrank.pyx [5/5] Cythonizing pyborist/cytrain.pyx running install running build running build_py creating build creating build/lib.linux-x86_64-2.7 creating build/lib.linux-x86_64-2.7/pyborist copying pyborist/init.py -> build/lib.linux-x86_64-2.7/pyborist copying pyborist/skl.py -> build/lib.linux-x86_64-2.7/pyborist running build_clib building 'libaboristcore' library creating build/ArboristCore creating build/temp.linux-x86_64-2.7 creating build/temp.linux-x86_64-2.7/pyborist /usr/bin/gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I../ArboristCore -Ipyborist -c ../ArboristCore/quant.cc -o build/temp.linux-x86_64-2.7/../ArboristCore/quant.o -std=c++11 -fopenmp -O3 -ffast-math cc1plus: warning: command line option '-Wstrict-prototypes' is valid for C/ObjC but not for C++ [enabled by default] /usr/bin/gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I../ArboristCore -Ipyborist -c ../ArboristCore/response.cc -o build/temp.linux-x86_64-2.7/../ArboristCore/response.o -std=c++11 -fopenmp -O3 -ffast-math cc1plus: warning: command line option '-Wstrict-prototypes' is valid for C/ObjC but not for C++ [enabled by default] /usr/bin/gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I../ArboristCore -Ipyborist -c ../ArboristCore/samplepred.cc -o build/temp.linux-x86_64-2.7/../ArboristCore/samplepred.o -std=c++11 -fopenmp -O3 -ffast-math cc1plus: warning: command line option '-Wstrict-prototypes' is valid for C/ObjC but not for C++ [enabled by default] /usr/bin/gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I../ArboristCore -Ipyborist -c ../ArboristCore/coprocrowrank.cc -o build/temp.linux-x86_64-2.7/../ArboristCore/coprocrowrank.o -std=c++11 -fopenmp -O3 -ffast-math cc1plus: warning: command line option '-Wstrict-prototypes' is valid for C/ObjC but not for C++ [enabled by default] /usr/bin/gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I../ArboristCore -Ipyborist -c ../ArboristCore/bottom.cc -o build/temp.linux-x86_64-2.7/../ArboristCore/bottom.o -std=c++11 -fopenmp -O3 -ffast-math cc1plus: warning: command line option '-Wstrict-prototypes' is valid for C/ObjC but not for C++ [enabled by default] /usr/bin/gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I../ArboristCore -Ipyborist -c ../ArboristCore/splitsig.cc -o build/temp.linux-x86_64-2.7/../ArboristCore/splitsig.o -std=c++11 -fopenmp -O3 -ffast-math cc1plus: warning: command line option '-Wstrict-prototypes' is valid for C/ObjC but not for C++ [enabled by default] /usr/bin/gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I../ArboristCore -Ipyborist -c ../ArboristCore/predblock.cc -o build/temp.linux-x86_64-2.7/../ArboristCore/predblock.o -std=c++11 -fopenmp -O3 -ffast-math cc1plus: warning: command line option '-Wstrict-prototypes' is valid for C/ObjC but not for C++ [enabled by default] /usr/bin/gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I../ArboristCore -Ipyborist -c ../ArboristCore/leaf.cc -o build/temp.linux-x86_64-2.7/../ArboristCore/leaf.o -std=c++11 -fopenmp -O3 -ffast-math cc1plus: warning: command line option '-Wstrict-prototypes' is valid for C/ObjC but not for C++ [enabled by default] /usr/bin/gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I../ArboristCore -Ipyborist -c ../ArboristCore/coproc.cc -o build/temp.linux-x86_64-2.7/../ArboristCore/coproc.o -std=c++11 -fopenmp -O3 -ffast-math cc1plus: warning: command line option '-Wstrict-prototypes' is valid for C/ObjC but not for C++ [enabled by default] /usr/bin/gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I../ArboristCore -Ipyborist -c ../ArboristCore/bv.cc -o build/temp.linux-x86_64-2.7/../ArboristCore/bv.o -std=c++11 -fopenmp -O3 -ffast-math cc1plus: warning: command line option '-Wstrict-prototypes' is valid for C/ObjC but not for C++ [enabled by default] /usr/bin/gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I../ArboristCore -Ipyborist -c ../ArboristCore/predict.cc -o build/temp.linux-x86_64-2.7/../ArboristCore/predict.o -std=c++11 -fopenmp -O3 -ffast-math cc1plus: warning: command line option '-Wstrict-prototypes' is valid for C/ObjC but not for C++ [enabled by default] /usr/bin/gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I../ArboristCore -Ipyborist -c ../ArboristCore/pretree.cc -o build/temp.linux-x86_64-2.7/../ArboristCore/pretree.o -std=c++11 -fopenmp -O3 -ffast-math cc1plus: warning: command line option '-Wstrict-prototypes' is valid for C/ObjC but not for C++ [enabled by default] /usr/bin/gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I../ArboristCore -Ipyborist -c ../ArboristCore/forest.cc -o build/temp.linux-x86_64-2.7/../ArboristCore/forest.o -std=c++11 -fopenmp -O3 -ffast-math cc1plus: warning: command line option '-Wstrict-prototypes' is valid for C/ObjC but not for C++ [enabled by default] /usr/bin/gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I../ArboristCore -Ipyborist -c ../ArboristCore/splitpred.cc -o build/temp.linux-x86_64-2.7/../ArboristCore/splitpred.o -std=c++11 -fopenmp -O3 -ffast-math cc1plus: warning: command line option '-Wstrict-prototypes' is valid for C/ObjC but not for C++ [enabled by default] /usr/bin/gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I../ArboristCore -Ipyborist -c ../ArboristCore/rowrank.cc -o build/temp.linux-x86_64-2.7/../ArboristCore/rowrank.o -std=c++11 -fopenmp -O3 -ffast-math cc1plus: warning: command line option '-Wstrict-prototypes' is valid for C/ObjC but not for C++ [enabled by default] /usr/bin/gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I../ArboristCore -Ipyborist -c ../ArboristCore/sample.cc -o build/temp.linux-x86_64-2.7/../ArboristCore/sample.o -std=c++11 -fopenmp -O3 -ffast-math cc1plus: warning: command line option '-Wstrict-prototypes' is valid for C/ObjC but not for C++ [enabled by default] /usr/bin/gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I../ArboristCore -Ipyborist -c ../ArboristCore/runset.cc -o build/temp.linux-x86_64-2.7/../ArboristCore/runset.o -std=c++11 -fopenmp -O3 -ffast-math cc1plus: warning: command line option '-Wstrict-prototypes' is valid for C/ObjC but not for C++ [enabled by default] /usr/bin/gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I../ArboristCore -Ipyborist -c ../ArboristCore/train.cc -o build/temp.linux-x86_64-2.7/../ArboristCore/train.o -std=c++11 -fopenmp -O3 -ffast-math cc1plus: warning: command line option '-Wstrict-prototypes' is valid for C/ObjC but not for C++ [enabled by default] /usr/bin/gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I../ArboristCore -Ipyborist -c ../ArboristCore/path.cc -o build/temp.linux-x86_64-2.7/../ArboristCore/path.o -std=c++11 -fopenmp -O3 -ffast-math cc1plus: warning: command line option '-Wstrict-prototypes' is valid for C/ObjC but not for C++ [enabled by default] /usr/bin/gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I../ArboristCore -Ipyborist -c ../ArboristCore/index.cc -o build/temp.linux-x86_64-2.7/../ArboristCore/index.o -std=c++11 -fopenmp -O3 -ffast-math cc1plus: warning: command line option '-Wstrict-prototypes' is valid for C/ObjC but not for C++ [enabled by default] /usr/bin/gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I../ArboristCore -Ipyborist -c ../ArboristCore/level.cc -o build/temp.linux-x86_64-2.7/../ArboristCore/level.o -std=c++11 -fopenmp -O3 -ffast-math cc1plus: warning: command line option '-Wstrict-prototypes' is valid for C/ObjC but not for C++ [enabled by default] /usr/bin/gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I../ArboristCore -Ipyborist -c pyborist/callback.cc -o build/temp.linux-x86_64-2.7/pyborist/callback.o -std=c++11 -fopenmp -O3 -ffast-math cc1plus: warning: command line option '-Wstrict-prototypes' is valid for C/ObjC but not for C++ [enabled by default] ar rc build/temp.linux-x86_64-2.7/liblibaboristcore.a build/temp.linux-x86_64-2.7/../ArboristCore/quant.o build/temp.linux-x86_64-2.7/../ArboristCore/response.o build/temp.linux-x86_64-2.7/../ArboristCore/samplepred.o build/temp.linux-x86_64-2.7/../ArboristCore/coprocrowrank.o build/temp.linux-x86_64-2.7/../ArboristCore/bottom.o build/temp.linux-x86_64-2.7/../ArboristCore/splitsig.o build/temp.linux-x86_64-2.7/../ArboristCore/predblock.o build/temp.linux-x86_64-2.7/../ArboristCore/leaf.o build/temp.linux-x86_64-2.7/../ArboristCore/coproc.o build/temp.linux-x86_64-2.7/../ArboristCore/bv.o build/temp.linux-x86_64-2.7/../ArboristCore/predict.o build/temp.linux-x86_64-2.7/../ArboristCore/pretree.o build/temp.linux-x86_64-2.7/../ArboristCore/forest.o build/temp.linux-x86_64-2.7/../ArboristCore/splitpred.o build/temp.linux-x86_64-2.7/../ArboristCore/rowrank.o build/temp.linux-x86_64-2.7/../ArboristCore/sample.o build/temp.linux-x86_64-2.7/../ArboristCore/runset.o build/temp.linux-x86_64-2.7/../ArboristCore/train.o build/temp.linux-x86_64-2.7/../ArboristCore/path.o build/temp.linux-x86_64-2.7/../ArboristCore/index.o build/temp.linux-x86_64-2.7/../ArboristCore/level.o build/temp.linux-x86_64-2.7/pyborist/callback.o running build_ext building 'pyborist.cyleaf' extension /usr/bin/gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -Ipyborist -I../ArboristCore -I/home/lemma/anaconda2/lib/python2.7/site-packages/numpy/core/include -I/home/lemma/anaconda2/include/python2.7 -c pyborist/cyleaf.cpp -o build/temp.linux-x86_64-2.7/pyborist/cyleaf.o -std=c++11 -fopenmp -O3 -ffast-math cc1plus: warning: command line option '-Wstrict-prototypes' is valid for C/ObjC but not for C++ [enabled by default] pyborist/cyleaf.cpp:746:31: error: 'BagRow' was not declared in this scope std::shared_ptr<std::vector > thisptr; ^ pyborist/cyleaf.cpp:746:37: error: template argument 1 is invalid std::shared_ptr<std::vector > thisptr; ^ pyborist/cyleaf.cpp:746:37: error: template argument 2 is invalid pyborist/cyleaf.cpp:746:39: error: template argument 1 is invalid std::shared_ptr<std::vector > thisptr; ^ pyborist/cyleaf.cpp:772:101: error: 'BagRow' was not declared in this scope PyObject (set)(struct pyx_obj_8pyborist_6cyleaf_PyPtrVecBagRow , std::shared_ptr<std::vector > ); ^ pyborist/cyleaf.cpp:772:107: error: template argument 1 is invalid PyObject (set)(struct __pyx_obj_8pyborist_6cyleaf_PyPtrVecBagRow , std::shared_ptr<std::vector > ); ^ pyborist/cyleaf.cpp:772:107: error: template argument 2 is invalid pyborist/cyleaf.cpp:772:109: error: template argument 1 is invalid PyObject (set)(struct pyx_obj_8pyborist_6cyleaf_PyPtrVecBagRow , std::shared_ptr<std::vector > ); ^ pyborist/cyleaf.cpp:773:31: error: 'BagRow' was not declared in this scope std::shared_ptr<std::vector > (get)(struct pyx_obj_8pyborist_6cyleaf_PyPtrVecBagRow ); ^ pyborist/cyleaf.cpp:773:37: error: template argument 1 is invalid std::shared_ptr<std::vector > (get)(struct __pyx_obj_8pyborist_6cyleaf_PyPtrVecBagRow ); ^ pyborist/cyleaf.cpp:773:37: error: template argument 2 is invalid pyborist/cyleaf.cpp:773:39: error: template argument 1 is invalid std::shared_ptr<std::vector > (get)(struct pyx_obj_8pyborist_6cyleaf_PyPtrVecBagRow ); ^ pyborist/cyleaf.cpp:955:158: error: 'BagRow' was not declared in this scope static PyObject pyx_f_8pyborist_6cyleaf_14PyPtrVecBagRow_set(struct pyx_obj_8pyborist_6cyleaf_PyPtrVecBagRow *pyx_v_self, std::shared_ptr<std::vector > pyx_v_ptr); / proto/ ^ pyborist/cyleaf.cpp:955:164: error: template argument 1 is invalid static PyObject __pyx_f_8pyborist_6cyleaf_14PyPtrVecBagRow_set(struct __pyx_obj_8pyborist_6cyleaf_PyPtrVecBagRow pyx_v_self, std::shared_ptr<std::vector > pyx_v_ptr); / proto/ ^ pyborist/cyleaf.cpp:955:164: error: template argument 2 is invalid pyborist/cyleaf.cpp:955:166: error: template argument 1 is invalid static PyObject *pyx_f_8pyborist_6cyleaf_14PyPtrVecBagRow_set(struct pyx_obj_8pyborist_6cyleaf_PyPtrVecBagRow __pyx_v_self, std::shared_ptr<std::vector > __pyx_v_ptr); / proto/ ^ pyborist/cyleaf.cpp:956:36: error: 'BagRow' was not declared in this scope static std::shared_ptr<std::vector > __pyx_f_8pyborist_6cyleaf_14PyPtrVecBagRow_get(struct __pyx_obj_8pyborist_6cyleaf_PyPtrVecBagRow pyx_v_self); / proto/ ^ pyborist/cyleaf.cpp:956:42: error: template argument 1 is invalid static std::shared_ptr<std::vector > __pyx_f_8pyborist_6cyleaf_14PyPtrVecBagRow_get(struct pyx_obj_8pyborist_6cyleaf_PyPtrVecBagRow __pyx_v_self); / proto/ ^ pyborist/cyleaf.cpp:956:42: error: template argument 2 is invalid pyborist/cyleaf.cpp:956:44: error: template argument 1 is invalid static std::shared_ptr<std::vector > __pyx_f_8pyborist_6cyleaf_14PyPtrVecBagRow_get(struct __pyx_obj_8pyborist_6cyleaf_PyPtrVecBagRow pyx_v_self); / proto/ ^ pyborist/cyleaf.cpp:956:158: error: invalid type in declaration before ';' token static std::shared_ptr<std::vector > __pyx_f_8pyborist_6cyleaf_14PyPtrVecBagRow_get(struct pyx_obj_8pyborist_6cyleaf_PyPtrVecBagRow __pyx_v_self); / proto/ ^ pyborist/cyleaf.cpp:1024:158: error: 'BagRow' was not declared in this scope static PyObject pyx_f_8pyborist_6cyleaf_14PyPtrVecBagRow_set(struct pyx_obj_8pyborist_6cyleaf_PyPtrVecBagRow *pyx_v_self, std::shared_ptr<std::vector > pyx_v_ptr) { ^ pyborist/cyleaf.cpp:1024:164: error: template argument 1 is invalid static PyObject __pyx_f_8pyborist_6cyleaf_14PyPtrVecBagRow_set(struct __pyx_obj_8pyborist_6cyleaf_PyPtrVecBagRow pyx_v_self, std::shared_ptr<std::vector > pyx_v_ptr) { ^ pyborist/cyleaf.cpp:1024:164: error: template argument 2 is invalid pyborist/cyleaf.cpp:1024:166: error: template argument 1 is invalid static PyObject *pyx_f_8pyborist_6cyleaf_14PyPtrVecBagRow_set(struct pyx_obj_8pyborist_6cyleaf_PyPtrVecBagRow pyx_v_self, std::shared_ptr<std::vector > __pyx_v_ptr) { ^ pyborist/cyleaf.cpp:1072:36: error: 'BagRow' was not declared in this scope static std::shared_ptr<std::vector > pyx_f_8pyborist_6cyleaf_14PyPtrVecBagRow_get(struct __pyx_obj_8pyborist_6cyleaf_PyPtrVecBagRow pyx_v_self) { ^ pyborist/cyleaf.cpp:1072:42: error: template argument 1 is invalid static std::shared_ptr<std::vector > __pyx_f_8pyborist_6cyleaf_14PyPtrVecBagRow_get(struct pyx_obj_8pyborist_6cyleaf_PyPtrVecBagRow pyx_v_self) { ^ pyborist/cyleaf.cpp:1072:42: error: template argument 2 is invalid pyborist/cyleaf.cpp:1072:44: error: template argument 1 is invalid static std::shared_ptr<std::vector > __pyx_f_8pyborist_6cyleaf_14PyPtrVecBagRow_get(struct pyx_obj_8pyborist_6cyleaf_PyPtrVecBagRow pyx_v_self) { ^ pyborist/cyleaf.cpp: In function 'int pyx_f_8pyborist_6cyleaf_14PyPtrVecBagRow_get(pyx_obj_8pyborist_6cyleaf_PyPtrVecBagRow)': pyborist/cyleaf.cpp:1073:31: error: 'BagRow' was not declared in this scope std::shared_ptr<std::vector > pyx_r; ^ pyborist/cyleaf.cpp:1073:37: error: template argument 1 is invalid std::shared_ptr<std::vector > pyx_r; ^ pyborist/cyleaf.cpp:1073:37: error: template argument 2 is invalid pyborist/cyleaf.cpp:1073:39: error: template argument 1 is invalid std::shared_ptr<std::vector > pyx_r; ^ pyborist/cyleaf.cpp:1073:49: error: invalid type in declaration before ';' token std::shared_ptr<std::vector > pyx_r; ^ pyborist/cyleaf.cpp: In function 'PyObject pyx_tp_new_8pyborist_6cyleaf_PyPtrVecBagRow(PyTypeObject, PyObject, PyObject)': pyborist/cyleaf.cpp:1515:57: error: 'BagRow' was not declared in this scope new((void)&(p->thisptr)) std::shared_ptr<std::vector > (); ^ pyborist/cyleaf.cpp:1515:63: error: template argument 1 is invalid new((void)&(p->thisptr)) std::shared_ptr<std::vector > (); ^ pyborist/cyleaf.cpp:1515:63: error: template argument 2 is invalid pyborist/cyleaf.cpp:1515:65: error: template argument 1 is invalid new((void)&(p->thisptr)) std::shared_ptr<std::vector > (); ^ pyborist/cyleaf.cpp: In function 'void initcyleaf()': pyborist/cyleaf.cpp:1873:151: error: 'BagRow' was not declared in this scope pyx_vtable_8pyborist_6cyleaf_PyPtrVecBagRow.set = (PyObject ()(struct pyx_obj_8pyborist_6cyleaf_PyPtrVecBagRow , std::shared_ptr<std::vector > ))__pyx_f_8pyborist_6cyleaf_14PyPtrVecBagRow_set; ^ pyborist/cyleaf.cpp:1873:157: error: template argument 1 is invalid __pyx_vtable_8pyborist_6cyleaf_PyPtrVecBagRow.set = (PyObject ()(struct __pyx_obj_8pyborist_6cyleaf_PyPtrVecBagRow , std::shared_ptr<std::vector > ))pyx_f_8pyborist_6cyleaf_14PyPtrVecBagRow_set; ^ pyborist/cyleaf.cpp:1873:157: error: template argument 2 is invalid pyborist/cyleaf.cpp:1873:159: error: template argument 1 is invalid pyx_vtable_8pyborist_6cyleaf_PyPtrVecBagRow.set = (PyObject ()(struct pyx_obj_8pyborist_6cyleaf_PyPtrVecBagRow *, std::shared_ptr<std::vector > ))pyx_f_8pyborist_6cyleaf_14PyPtrVecBagRow_set; ^ pyborist/cyleaf.cpp:1874:84: error: 'BagRow' was not declared in this scope pyx_vtable_8pyborist_6cyleaf_PyPtrVecBagRow.get = (std::shared_ptr<std::vector > ()(struct __pyx_obj_8pyborist_6cyleaf_PyPtrVecBagRow ))__pyx_f_8pyborist_6cyleaf_14PyPtrVecBagRow_get; ^ pyborist/cyleaf.cpp:1874:90: error: template argument 1 is invalid pyx_vtable_8pyborist_6cyleaf_PyPtrVecBagRow.get = (std::shared_ptr<std::vector > ()(struct __pyx_obj_8pyborist_6cyleaf_PyPtrVecBagRow ))pyx_f_8pyborist_6cyleaf_14PyPtrVecBagRow_get; ^ pyborist/cyleaf.cpp:1874:90: error: template argument 2 is invalid pyborist/cyleaf.cpp:1874:92: error: template argument 1 is invalid __pyx_vtable_8pyborist_6cyleaf_PyPtrVecBagRow.get = (std::shared_ptr<std::vector > (*)(struct pyx_obj_8pyborist_6cyleaf_PyPtrVecBagRow ))__pyx_f_8pyborist_6cyleaf_14PyPtrVecBagRow_get; ^ pyborist/cyleaf.cpp:1874:97: error: expected primary-expression before ')' token __pyx_vtable_8pyborist_6cyleaf_PyPtrVecBagRow.get = (std::shared_ptr<std::vector > ()(struct pyx_obj_8pyborist_6cyleaf_PyPtrVecBagRow *))pyx_f_8pyborist_6cyleaf_14PyPtrVecBagRow_get; ^ pyborist/cyleaf.cpp:1874:99: error: expected primary-expression before 'struct' pyx_vtable_8pyborist_6cyleaf_PyPtrVecBagRow.get = (std::shared_ptr<std::vector > ()(struct __pyx_obj_8pyborist_6cyleaf_PyPtrVecBagRow ))__pyx_f_8pyborist_6cyleaf_14PyPtrVecBagRow_get; ^ pyborist/cyleaf.cpp:1874:152: error: expected ';' before 'pyx_f_8pyborist_6cyleaf_14PyPtrVecBagRow_get' pyx_vtable_8pyborist_6cyleaf_PyPtrVecBagRow.get = (std::shared_ptr<std::vector > ()(struct __pyx_obj_8pyborist_6cyleaf_PyPtrVecBagRow ))__pyx_f_8pyborist_6cyleaf_14PyPtrVecBagRow_get; ^ pyborist/cyleaf.cpp: At global scope: pyborist/cyleaf.cpp:1072:47: warning: 'int pyx_f_8pyborist_6cyleaf_14PyPtrVecBagRow_get(pyx_obj_8pyborist_6cyleaf_PyPtrVecBagRow*)' defined but not used [-Wunused-function] static std::shared_ptr<std::vector > __pyx_f_8pyborist_6cyleaf_14PyPtrVecBagRow_get(struct pyx_obj_8pyborist_6cyleaf_PyPtrVecBagRow *__pyx_v_self) { ^ error: command '/usr/bin/gcc' failed with exit status 1

suiji commented 6 years ago

Reopening the Issue.

This looks like another change to the Core for which no compensating change occurred in the Python bridge.

Will advise when the entire package can once again be built. Will also add a TODO to include Pyborist in the Travis script.

suiji commented 6 years ago

In the short term, you may be better off using the @mjuarezm fork from earlier this year. It is the most recently tested version.

It is probably worth pointing out that the Python front end will continue lag behind its R counterpart, even after the compilation errors are fixed. We haven't had an active Python contributor in well over a year and I do not currently have cycles available this bridge. Missing from this bridge, for example, are support for categorical and sparse predictors.

suiji commented 6 years ago

To remain open until bridge up to date with current Core.

kroscek commented 6 years ago

@suji Thanks, Forking mjuarezm repo fixed the issue (temporarily?).