Error in FUN(newX[, i], ...) : is.atomic(y) is not TRUE

[upohsdscz]

------ Mon Jul 29 12:08:23 2024 ------## *** 8th: scPagwas_perform_score function start! ****

• Get Pathways'rankPvalue for each celltypes! [1] "Epithelial cells" [1] "T cells" [1] "Endothelial cells" [1] "Fibroblasts" [1] "Macrophages" [1] "B cells" [1] "Mast cells" [1] "pDCs"
• Get scPgwas score for each single cell done!

  ------ Mon Jul 29 12:11:12 2024 ------## *** 9th: scGet_PCC function start! ****

  done!

• Get Random Correct background pvalue for each single cell! |===================================================================================================================================| 100% Error in FUN(newX[, i], ...) : is.atomic(y) is not TRUE In addition: There were 50 or more warnings (use warnings() to see the first 50) 老师您好，请问这个问题如何解决呀

[upohsdscz]

packageVersion("Seurat") [1] ‘4.4.0’ packageVersion("SeuratObject") [1] ‘4.1.4’

[upohsdscz]

correct_pdf<-Get_CorrectBg_p(Single_data=Single_data,

• scPagwas.TRS.Score=Single_data$scPagwas.TRS.Score1,
• iters_singlecell=100,
• n_topgenes=1000,
• assay="RNA",
• scPagwas_topgenes=scPagwas_topgenes) |====================================================================================================================| 100% Error in FUN(newX[, i], ...) : is.atomic(y) is not TRUE In addition: Warning message: In asMethod(object) : sparse->dense coercion: allocating vector of size 7.5 GiB 分开来跑之后目测是运行这个函数时出现了问题