Report figures do not include komplexity-filtered reads

sunbeam-labs / sbx_report

Generates a final report, with figures, from a Sunbeam run

3 stars 1 forks source link

Report figures do not include komplexity-filtered reads #12

Open louiejtaylor opened 5 years ago

louiejtaylor commented 5 years ago

The komplexity-filtered reads are not shown in the QC overview stacked barplot. This may be at heart a QC issue, as they are also not included in the preprocess_summary.tsv table. Thoughts on whether I should open a main sunbeam issue for this, @ressy? (Both of these should hopefully be a quick fix).

Figured this out in a dataset where 80-90% of the reads were low-complexity and I was wondering where the heck they all went.

ressy commented 5 years ago

Yeah if we should change that table creation in sunbeamlib.reports.summarize_qual_decontam (does that look like the right place?) then we should have a sunbeam issue for it, I think. Thanks!