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sunbeam-labs / sunbeam

A robust, extensible metagenomics pipeline
http://sunbeam.readthedocs.io
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More informative error when proper executor isn't installed #448

Open Ulthran opened 5 months ago

Ulthran commented 5 months ago

Describe the bug When the necessary executor isn't installed now, snakemake will fail with an invalid choice message. Sunbeam should provide the proper remediation (go install the proper executor https://snakemake.github.io/snakemake-plugin-catalog/plugins/executor/slurm.html)

Ulthran commented 3 months ago

https://github.com/snakemake/snakemake/issues/2767