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sunduanchen / Scissor

Scissor package
GNU General Public License v3.0
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Crash happens when performing Scissor on Rstudio Server #12

Closed mitraclip closed 2 years ago

mitraclip commented 2 years ago

Thank you for developing such a powerful tool. I run the Scissor function after loading files needed. But several times the function stopped in the state which is shown in the snapshot. And it only returned the result used for next step regression. I also found that the rstudio server crashed when this function is run in the stage as shown in the snapshot. I guessed there might be something unmatched. 129429979536314360

sunduanchen commented 2 years ago

Can your share your data with me?

I wonder it may caused by the big size of your data.

mitraclip commented 2 years ago

Thank you for your kind cooperation. Could you give me your common email address?

Best Yuxing Chen

sunduanchen commented 2 years ago

My email address is sunduanchen@gmail.com

Best, Duanchen

shawnchizari commented 2 years ago

Hi Duanchen,

I am running into the same issue where R studio crashes at the same stage. I do not have an output aside from the save file that is generated on line 125 of Scissor.R. I am working with small single cell and bulk datasets, and I even tried downsampling my Seurat object to 500 cells, but I still encounter this crash.

mitraclip commented 2 years ago

Hi Duanchen,

I am running into the same issue where R studio crashes at the same stage. I do not have an output aside from the save file that is generated on line 125 of Scissor.R. I am working with small single cell and bulk datasets, and I even tried downsampling my Seurat object to 500 cells, but I still encounter this crash.

Yes, I also downsampled my data and the size of my data is smaller than the data in tutorial.

sunduanchen commented 2 years ago

Hi Yuxing and Shawn,

I made an update to debug this. Please let me know if it works on your data.

Best, Duanchen