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sunduanchen / Scissor

Scissor package
GNU General Public License v3.0
168 stars 29 forks source link

R Session Aborted when running Scissor #18

Closed Eddylyf closed 2 years ago

Eddylyf commented 2 years ago

Hi Duanchen, Thanks for developing this interesting tools to discover important cell populations according to bulk data and scRNA-seq data! I met some issues and cannot run my own datasets: when I run Scissor on my created object, the error of "Scissor" step is "Error in array(x, c(length(x), 1L), if (!is.null(names(x))) list(names(x), : 'data' must be of a vector type, was 'NULL'"; if I use "Seurat_preprocessing" function, the R studio will be aborted when running "Scissor" function. So could you help me debug these issues please? Thanks so much!

Eddylyf commented 2 years ago

By the way, I can run Scissor successfully using your example data.

sunduanchen commented 2 years ago

Can you send me your data and let me debug it? For your data privacy, you can send me a subset of your data, if it is available.

Best, Duanchen

Eddylyf commented 2 years ago

Sure! Could you please provide me a email address? Thanks a lot! Best, Yanfang

sunduanchen commented 2 years ago

sunduanchen@gmail.com

Eddylyf commented 2 years ago

Hi Duanchen, I am sorry that my email cannot deliver to you which may due to the email server limits. Even all my files are less than 50M. Thanks again! Best, Yanfang

sunduanchen commented 2 years ago

You can try dropbox or other tools for sharing large files.

Best, Duanchen

hyjforesight commented 2 years ago

dont use SCTransform. Use LogNormalize workflow.