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sunduanchen / Scissor

Scissor package
GNU General Public License v3.0
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Shall the alpha value be the same between Scissor() and reliability.test() functions? #23

Closed hyjforesight closed 2 years ago

hyjforesight commented 2 years ago

Hello Scissor, I'm wondering whether the alpha value should be the same between the below 2 functions. According to your tutorial, we need to optimize the best alpha in Scissor(). Do we need to change it accordingly in reliability.test()? Scissor(bulk_dataset, sc_dataset, phenotype, tag = tag, alpha = 0.3, family = "binomial") reliability.test(X, Y, network, alpha = 0.05, family = "binomial", cell_num = numbers, n = 100, nfold = 10) Thanks! Best, YJ

sunduanchen commented 2 years ago

Hi YJ,

Yes. You should use the optimized alpha in reliability.test().

Best, Duanchen