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sunduanchen / Scissor

Scissor package
GNU General Public License v3.0
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Error in asMethod(object) : Cholmod error 'out of memory' at file ../Core/cholmod_memory.c, line 146 #28

Open snowluckyheart opened 2 years ago

snowluckyheart commented 2 years ago

Hello developers, I got the following prompt when running the code:infos1 <- Scissor(bulkdata, scRNA, phenotype, alpha = 0.05, family = "binomial", Save_file = 'Scissor_IPAH.RData').

Error in asMethod(object) : Cholmod error 'out of memory' at file ../Core/cholmod_memory.c, line 146

How to sovle this problem? Looking forward your reply

Thank you very much!

sunduanchen commented 2 years ago

Hi,

It should be caused by loading the data.

Now I am working on the source c code to fix it and will release a new version.

Thank you very much for your question.

Best, Duanchen

Pchaskar commented 2 years ago

I face the same Error. Is this issue resolved? Thanks

DongqiangZeng0808 commented 1 year ago

I face the same Error. Is this issue resolved?

Thanks

Shubhra1994 commented 1 year ago

Same issue! Any solutions? Maybe filtering the single cell matrix?