Output file is not under specified "--outputDir"

sunnyisgalaxy / moabs

A comprehensive, accurate and efficient solution for analysis of large scale base-resolution DNA methylation data

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Output file is not under specified "--outputDir" #36

Open Reemann opened 3 years ago

Reemann commented 3 years ago

When I using mcall, I have specified the output director by using --outputDir. However, there is no output files under that direction. My pipeline is:

mcall -m input.bam --outputDir fullPathToOutputDir -g danRer11 --webOutputDir fullPathToWebOutputDir -r fullPathToFastaFile -a 1 -p 4