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suny-downstate-medical-center / netpyne

A Python package to facilitate the development, parallel simulation, optimization and analysis of multiscale biological neuronal networks in NEURON.
http://www.netpyne.org
MIT License
146 stars 137 forks source link

Set up Travis CI #37

Closed salvadord closed 7 years ago

salvadord commented 8 years ago

Test examples, tutorial code, and other repos -- M1, claustrum -- (if possible?)

salvadord commented 8 years ago

@pgleeson @adrianq I'm having trouble setting up Travis, in particular installing the scipy python package -- tried several things, can you have a quick look if you get a chance? (maybe you see some obvious solution) thanks!

pgleeson commented 8 years ago

Have tried some things out on https://github.com/Neurosim-lab/netpyne/tree/travis_test, but for some reason these commits don't kick off Travis jobs. Maybe because I don't own the repo? @salvadord can you make a minor edit on that branch to see if it works for you?

salvadord commented 8 years ago

oh I turned off travis since wasn't working; just turned back on; also just about to push some changes. thanks for looking into it

salvadord commented 8 years ago

you can check travis output now: https://travis-ci.org/Neurosim-lab/netpyne get "ImportError: No module named scipy" even though its in the apt packages list. other packages didnt seem to be available either, so I installed via pip, but scipy gives error via pip. maybe missing some paths setup? what is needed in travis so apt packages available from python? thanks