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suny-downstate-medical-center / netpyne

A Python package to facilitate the development, parallel simulation, optimization and analysis of multiscale biological neuronal networks in NEURON.
http://www.netpyne.org
MIT License
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Changing .json extension to _data.json due to the fact that the data … #683

Closed josemendez-villanueva closed 2 years ago

josemendez-villanueva commented 2 years ago

…files with 'simdata ' have that extension and thus jobs were never completing and were defaulting fitness to max fitness.

josemendez-villanueva commented 2 years ago

Added a batch method (SBI = Simulation Based Inference) with an example folder (sbiOptim). Former changes include changing .json to _data.json in optuna_parallel.py as _data.json is how the data files are named. Else, if left as .json simulation never completes as it cannot access the data that is needed.