Closed jchen6727 closed 1 year ago
batch:
netpyne/netpyne/batch.
grid and utils to run on HPC SGE (qsub
).
see jobStringHPCSGE
in utils.
def jobStringHPCSGE(jobName, walltime, vmem, queueName, cores, custom, command, log, **kwargs):
the arguments specified in runCfg include:
sge_args = {
# def jobStringHPCSGE(jobName, walltime, vmem, queueName, cores, custom, command)
'jobName': jobName,
'walltime': walltime,
'vmem': '32G',
'queueName': 'cpu.q',
'cores': 1,
'custom': '',
'mpiCommand': 'mpiexec',
'log': "~/qsub/{}.run".format(jobName)
}
utils, batch modified to support submission to SGE