Closed FionaMoon closed 2 years ago
Hi,
identifyClusters( object, dim_reduction_method = c("pca", "nnmf", "lsi"), useIntegrativeEmbeddings = FALSE, integrative_method = c("combat", "seurat", "harmony", "supervised_harmony"), n.dims.use = 30, n.neighbors = 30, knn.n_trees = 50, knn.metric = c("euclidean", "cosine"), knn.n_threads = 1 )
Thank you, you answer really helps !
Hi , I have some questions about
identifyClusters
function.get_clusters
, but I can't find which slot inSingCellaR object
contains the infomation about clusters by usingstr(SingCellaR object)
.resolution
to find the proper clustering result when usingSeurat
, just like thisSo should I change parameters in
identifyClusters
function to find the proper clustering result ? Thank you in advance. Fiona