deps(python): bump snakemake from 8.11.0 to 8.11.3 in /dependencies/python

[dependabot[bot]]

Bumps snakemake from 8.11.0 to 8.11.3.

Release notes

Sourced from snakemake's releases.

v8.11.3

8.11.3 (2024-05-03)

Bug Fixes

• ignore errors when cleaning up runtime cache (#2859) (6df7046)
• show queries of remote storage files instead of local paths in summary (#2860) (ba1db8e)

v8.11.2

8.11.2 (2024-05-02)

Bug Fixes

• bug when requesting extended benchmark with slurm (#2855) (0e039ff)

v8.11.1

8.11.1 (2024-04-29)

Bug Fixes

• check template rendering output for leaked input file paths (#2850) (433302e)
• do not distinguish between local and remote rules in dryrun (74b99ec)
• omit norun jobs when determining remote storage input file retrieval (#2854) (37a7c7f)
• Prevent binary log files to crash snakemake execution with show-failed-logs (#2827) (8a80bda)
• replace pkg_resources for python 3.12 (#2831) (ac144fc)
• return set instead of list when just --quiet (#2829) (eeb57e2)
• small typo in error (#2853) (325a715)
• use keyword arguments in _IOFile.open (#2847) (50c84dc)

Documentation

• fix typo and link for RO Crate (#2851) (cec0041)

Changelog

Sourced from snakemake's changelog.

8.11.3 (2024-05-03)

Bug Fixes

• ignore errors when cleaning up runtime cache (#2859) (6df7046)
• show queries of remote storage files instead of local paths in summary (#2860) (ba1db8e)

8.11.2 (2024-05-02)

Bug Fixes

• bug when requesting extended benchmark with slurm (#2855) (0e039ff)

8.11.1 (2024-04-29)

Bug Fixes

• check template rendering output for leaked input file paths (#2850) (433302e)
• do not distinguish between local and remote rules in dryrun (74b99ec)
• omit norun jobs when determining remote storage input file retrieval (#2854) (37a7c7f)
• Prevent binary log files to crash snakemake execution with show-failed-logs (#2827) (8a80bda)
• replace pkg_resources for python 3.12 (#2831) (ac144fc)
• return set instead of list when just --quiet (#2829) (eeb57e2)
• small typo in error (#2853) (325a715)
• use keyword arguments in _IOFile.open (#2847) (50c84dc)

Documentation

• fix typo and link for RO Crate (#2851) (cec0041)

Commits

• 4a4eb40 chore(main): release 8.11.3 (#2863)
• e43cfe3 ci: mark issues and PRs as stale (#2554)
• 6df7046 fix: ignore errors when cleaning up runtime cache (#2859)
• ba1db8e fix: show queries of remote storage files instead of local paths in summary (...
• dd53319 chore(main): release 8.11.2 (#2858)
• 0e039ff fix: bug when requesting extended benchmark with slurm (#2855)
• 769e0a4 add humanfriendly
• fc70c90 chore(main): release 8.11.1 (#2849)
• 50c84dc fix: use keyword arguments in _IOFile.open (#2847)
• 37a7c7f fix: omit norun jobs when determining remote storage input file retrieval (#2...
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[dependabot[bot]]

Superseded by #5635.