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superphy / prairiedog

next-gen pangenome graphs for predictive genomics
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Add method for pretty-printing found paths #142

Closed kevinkle closed 5 years ago

kevinkle commented 5 years ago

In https://github.com/superphy/prairiedog/pull/148

kevinkle commented 5 years ago 
2019-08-26 17:17:16 49b3d7484e76 prairiedog[1] INFO Found:
Sample SRR3295967.fasta has:
Contig >SRR3295967.fasta|NODE_18_length_55006_cov_31.9658_ID_4499_pilon with variant(s):
GACTACATAAAGCACCAGCTTGAAGAGGATAAAATGGGTGAGCAATTATCGATCCCTTATCCGGGCAGCCCGTTTACGGGCCGTAAGTAACGAAGTTTGATGCAAATGTCAGATCGTATGCGCCTGTTAGGGCGCGGCTGGTAAGAGAGCCTTACAGGCGCATCTGAAAAACCTCCGGCT
Contig >SRR3295967.fasta|NODE_1_length_743759_cov_27.1657_ID_4465_pilon with variant(s):
GACTACATAAAGCACCAGCTTGAAGAGGATAAAATGGGTGAGCAATTATCGATCCCTTATCCGGGCAGCCCGTTTACGGGCCGTAAGTAACGAAGTTTGATGCAAATGTCAGATCGTATGCGCCTGTTAGGGCGCGGCTGGTAAGAGAGCCTTACAGGCGCATCTGAAAAACCTCCGGCT
Contig >SRR3295967.fasta|NODE_26_length_22826_cov_30.1741_ID_4515_pilon with variant(s):
GACTACATAAAGCACCAGCTTGAAGAGGATAAAATGGGTGAGCAATTATCGATCCCTTATCCGGGCAGCCCGTTTACGGGCCGTAAGTAACGAAGTTTGATGCAAATGTCAGATCGTATGCGCCTGTTAGGGCGCGGCTGGTAAGAGAGCCTTACAGGCGCATCTGAAAAACCTCCGGCT