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superphy / prairiedog

next-gen pangenome graphs for predictive genomics
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Creates all required files except the node_labels #28

Closed kevinkle closed 5 years ago

kevinkle commented 5 years ago

For node_labels, will have to find a way to lookup the kmer to some label (AMR, regulatory, etc)

codecov[bot] commented 5 years ago

Codecov Report

:exclamation: No coverage uploaded for pull request base (develop@fef926c). Click here to learn what that means. The diff coverage is 97.36%.

Impacted file tree graph

@@            Coverage Diff             @@
##             develop      #28   +/-   ##
==========================================
  Coverage           ?   94.45%           
==========================================
  Files              ?       11           
  Lines              ?      361           
  Branches           ?        0           
==========================================
  Hits               ?      341           
  Misses             ?       20           
  Partials           ?        0
Impacted Files Coverage Δ
prairiedog/prairiedog.py 100% <100%> (ø)
prairiedog/gref.py 100% <100%> (ø)
prairiedog/kmers.py 94.2% <100%> (ø)
prairiedog/subgraph_ref.py 100% <100%> (ø)
prairiedog/kmer_graph.py 94.82% <100%> (ø)
prairiedog/config.py 100% <100%> (ø)
prairiedog/graph_ref.py 100% <100%> (ø)
prairiedog/networkx_graph.py 87.09% <70%> (ø)
prairiedog/graph.py 72.41% <80%> (ø)
prairiedog/cli.py 94.11% <90.9%> (ø)

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