Add option to set number of cores via cli

superphy / prairiedog

next-gen pangenome graphs for predictive genomics

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Closed kevinkle closed 5 years ago

kevinkle commented 5 years ago

mostly because we create one networkx graph per file (and we process 1 file per core)

kevinkle commented 5 years ago

Looks like we ran out of ram running this too parallel

kevinkle commented 5 years ago

We're just going to use snakemake as our job runnner, eg:

snakemake -j 24