Open kevinkle opened 5 years ago
The idea would be, something like:
for node A, has attributes MIC_AMP_1: some number of genomes, MIC_AMP_2: some number of genomes.
We could do this after the fact to by going through the graph and for each node: query all its edges and lookup associated MIC/metadata value.
We could also do this as we add genomes / when we update the graph with new genomes.
This might be useful for some GWAS work, such as finding which nodes (kmers) and paths are most associated with which phenotypes
Look more into scoary
kevinkle
commented
5 years ago
The idea would be, something like:
for node A, has attributes MIC_AMP_1: some number of genomes, MIC_AMP_2: some number of genomes.
We could do this after the fact to by going through the graph and for each node: query all its edges and lookup associated MIC/metadata value.
We could also do this as we add genomes / when we update the graph with new genomes.
This might be useful for some GWAS work, such as finding which nodes (kmers) and paths are most associated with which phenotypes