superphy / spfy

Spfy: an integrated graph database for real-time prediction of Escherichia coli phenotypes and downstream comparative analyses
https://lfz.corefacility.ca/superphy/grouch/
Apache License 2.0
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could not create blastdb #258

Open kevinkle opened 6 years ago

kevinkle commented 6 years ago

Of the 3155 files in the first batch, we get roughly 20 which qc reports it can't create a blastdb for. Not sure what's going on, originally thought it was related to file names though perhaps it has to do with the tempfile usage.

Some examples.

Ec27486.fasta
201700106.fasta
ERS799794.gff.fasta
Escherichia_coli_GW_UTI_002.fasta
BSC14.fasta
Ec28033.fasta

Link: https://sentry.io/share/issue/17b2545cdcaa4e2b964f61a5a767e246/