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superphy / spfy

Spfy: an integrated graph database for real-time prediction of Escherichia coli phenotypes and downstream comparative analyses
https://lfz.corefacility.ca/superphy/grouch/
Apache License 2.0
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Merge: Fixes issues when ECTyper doesn't find all alleles for Phylotyper #309

Closed kevinkle closed 6 years ago

kevinkle commented 6 years ago

Works locally as of https://github.com/superphy/spfy/pull/309/commits/0784b94b4adba3d9291643cec5a2d10ccda511ee

kevinkle commented 6 years ago

Just started re-running the genbank dataset on corefacility

kevinkle commented 6 years ago

I'm accepting the merge for now. Matt's suggestions are in https://github.com/superphy/spfy/issues/311 and we can address it in a future refactor.