Open jloubser opened 1 year ago
Hi,
Thank you very much for contacting!
The seqeunce was the following:
1.Fastqc_script.sh 2.trim_script.sh (in case the reads needed to be trimmed) 3.analysis.sh (note, that the ploidy and sample names need to be adjusted) 4.vcf_work.sh 5.allele_frequency_filtering_for_unique_mut.py 6.mutation_analysis (either for 5 or 6 strains, depending on the actual file)
Hope this helps! Best, Eva
Hi!
I'd liek to try out the scripts, I have two isolates to analyze. Could you perhaps provide some documentation in terms of the sequence of the scripts. I can more or less figure it out but I'd just like to make sure?
Thank you!