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svalkiers / clusTCR

CDR3 clustering module providing a new method for fast and accurate clustering of large data sets of CDR3 amino acid sequences, and offering functionalities for downstream analysis of clustering results.
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predicting new TCR peptide to existing cluster #30

Open linuxbioinfoguy opened 2 years ago

linuxbioinfoguy commented 2 years ago

Hi, After I make the cluster by the Clustering/fit function, is there anyway or convenience way to predict a new incoming TCR peptide sequence and assign a (existing) cluster number to it. I know I can do it myself with some pattern search with the feature motif, but if I have thousands of pattern and it won't be efficient in doing that way. So just wondering if there is a better way of a existing function already.

Thanks!

Jason

svalkiers commented 2 years ago

Hi Jason,

Thanks for showing interest in ClusTCR. Currently, this functionality does not exist in ClusTCR so you will have to assign them manually. We are thinking about adding this functionality in the future, however.

Cheers. Sebastiaan