db_hdf5_v2.py shows warning about pandas.lib being deprecated

[svdhoog]

db_hdf5_v2.py:41: FutureWarning: pandas.lib is deprecated and will be removed in a future version.
You can access infer_dtype as pandas.api.types.infer_dtype
  types = df.apply(lambda x: pd.lib.infer_dtype(x.values))

[0xfabi]

It seems like we have to change 'pd.lib.infer_dtype(x.values)' to 'pd.api.types.infer_dtype(x.values)' [see https://pandas.pydata.org/pandas-docs/stable/generated/pandas.api.types.infer_dtype.html].

Can you tell me how you execute it? Then I can test my guess and see if the warning is gone.

[svdhoog]

python3 /path/db_hdf5_v2.py -o h5/ -v -s db/

where db/ is the folder with several files called set_n_run_k_iters.db (can also be just one). The folder h5/ will be created by the script if it does not exist yet. If all these paths can be absolute I do not know, I use the relative paths to db/ and h5/ by starting from a folder in which those are subfolders. I do give the absolute path to db_hdf5_v2.py though.

[0xfabi]

Where can I find this db/ folder with the set...iters.db files?

[svdhoog]

https://gitlab.ub.uni-bielefeld.de/hoog/ETACE-Conquaire/tree/master/Final_format/data/gamma_scenarios/db

[0xfabi]

Ok, I have updated the lib use and also fixed some path showing problems. ("Directory [path] is used for output files") and now shows correct output path.

[svdhoog]

Was this last update committed? Can't find it in commits, and pull your fork still gives me this error.

[0xfabi]

Should be commited now.