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svm-zhang / AGOUTI

Annotated Genome Optimization Using Transcriptome Information
MIT License
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Recover_untouched_sequences ValueError #5

Closed aihardin closed 8 years ago

aihardin commented 8 years ago

Hi! I'm trying this on a assembly created with meraculous and previously annotated with AGUSTUS. Things seem to be going well but I'm getting this error:

2016-07-02 11:50:35,136 - INFO - AGOUTI_PATH PROGRESS - [BEGIN] Recovring original scaffolding Traceback (most recent call last): File "/home/aaron/bin/AGOUTI/agouti.py", line 286, in main() File "/home/aaron/bin/AGOUTI/agouti.py", line 283, in main args.func(args) File "/home/aaron/bin/AGOUTI/agouti.py", line 220, in run_scaffolder prefix) File "/home/aaron/bin/AGOUTI/src/agouti_path.py", line 41, in agouti_path_main agPathDebug) File "/home/aaron/bin/AGOUTI/src/agouti_path.py", line 77, in recover_untouchedsequences preCtgIndex = int(preCtg.split('')[-1]) ValueError: invalid literal for int() with base 10: 'Scaffold421951'

svm-zhang commented 8 years ago

Hello!

Thanks for using AGOUTI.

Could you please give little bit more information on what you have done?

And I just made an patch one hour ago. Could you please pull that down and try again. If the error is still there, let me understand your case a bit more and we go from there.

Simo

aihardin commented 8 years ago

Thanks! The patch solved the error.

svm-zhang commented 8 years ago

Glad to hear it worked out for you.