search

swannyy14 / ggmanh

Other
0 stars 3 forks source link

X-axis scale #1

Closed mfazel closed 11 months ago

mfazel commented 11 months ago

Hi,

I'm trying to use ggmanh manhattan_plot and noticed all chromosome widths are drawn equally, however, this is not the reality and x-axis is not a pure categorical variable. Is there a way to make it scale to the chromosome size? I even noticed in the package vignettes the images are drawn the same way. (https://bioconductor.org/packages/devel/bioc/vignettes/ggmanh/inst/doc/ggmanh.html)

Thanks, Mehdi

leejs-abv commented 11 months ago

Hi Mehdi, you can set the argument preserve.position to TRUE to use the actual position / scale the width of each chromosomes.

Best, John

mfazel commented 11 months ago

Very nice😃 sorry for the obvious question! somehow I missed this 🤔 probably I was following the vignettes and didn't check the help page for "..."s ! Thanks Mehdi