pycuda.driver error - Githubissues

swarris / Pacasus

Correction of palindromes in long reads from PacBio and Nanopore

MIT License

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Closed YuyaKiguchi closed 5 years ago

YuyaKiguchi commented 5 years ago

Hi,

I run the pacasus for my WGA long reads. This is the command.

pacasus.py test.fasta -o test.pacasus --device_type=CPU -L test.pacasus.log

But I got the python module error of pycuda.driver.

Please check the log file, and suggest the solution.

Best, Yuya.

swarris commented 5 years ago

Hi,

Did you install pycuda?? And you appear to be running pacasus on a CPU. In that case you need OpenCL en pyopencl.

Best, Sven

YuyaKiguchi commented 5 years ago

Thanks for reply.

I rerun using CPU and OpenCL options.

pacasus.py test.fasta --device_type=CPU --framework=opencl -o test.opencl -L test.log

But I got the another error. test.log

Please suggest the solution.

Best, Yuya.

swarris commented 5 years ago

Hi,

You are (still) missing the OpenCL drivers or they are not properly installed. Please check out the readme for more information.

Best, Sven