Traceback (most recent call last):
File "/home/ctprouser/aligner_tool/pyPaSWAS/pypaswas.py", line 11, in
ppw.run()
File "/home/ctprouser/aligner_tool/pyPaSWAS/pyPaSWAS/pypaswasall.py", line 207, in run
query_sequences = self._get_query_sequences(self.arguments[0], start=query_start, end=query_end)
File "/home/ctprouser/aligner_tool/pyPaSWAS/pyPaSWAS/pypaswasall.py", line 104, in _get_query_sequences
reader.read_records(start,end)
File "/home/ctprouser/aligner_tool/pyPaSWAS/pyPaSWAS/Core/Readers.py", line 105, in read_records
self.records = [SWSeqRecord(Seq(str(record.seq), record.seq.alphabet),
File "/home/ctprouser/aligner_tool/pyPaSWAS/pyPaSWAS/Core/Readers.py", line 105, in
self.records = [SWSeqRecord(Seq(str(record.seq), record.seq.alphabet),
AttributeError: 'Seq' object has no attribute 'alphabet'
I am not much of a programmer. Please debug and tell me what needs to be done to fix it?
I ran this command after installing Biopython. Since the pypaswas.py was not executable, this is the command I ran:
python3 pyPaSWAS/pypaswas.py SO_11372_E13_NPC_UT_6_hr_070922_R1.fastq SO_11372_E13_NPC_UT_6_hr_070922_R2.fastq -1 fastq -2 fastq
Error:
Traceback (most recent call last): File "/home/ctprouser/aligner_tool/pyPaSWAS/pypaswas.py", line 11, in
ppw.run()
File "/home/ctprouser/aligner_tool/pyPaSWAS/pyPaSWAS/pypaswasall.py", line 207, in run
query_sequences = self._get_query_sequences(self.arguments[0], start=query_start, end=query_end)
File "/home/ctprouser/aligner_tool/pyPaSWAS/pyPaSWAS/pypaswasall.py", line 104, in _get_query_sequences
reader.read_records(start,end)
File "/home/ctprouser/aligner_tool/pyPaSWAS/pyPaSWAS/Core/Readers.py", line 105, in read_records
self.records = [SWSeqRecord(Seq(str(record.seq), record.seq.alphabet),
File "/home/ctprouser/aligner_tool/pyPaSWAS/pyPaSWAS/Core/Readers.py", line 105, in
self.records = [SWSeqRecord(Seq(str(record.seq), record.seq.alphabet),
AttributeError: 'Seq' object has no attribute 'alphabet'
I am not much of a programmer. Please debug and tell me what needs to be done to fix it?