Checking for 11858 cell barcodes [1] "In Progress:" [1] "Merge Seurat list" Error in validObject(object = .Object) : invalid class "Seurat" object: all assays must have a key

swaruplabUCI / ArchRtoSignac

An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)

MIT License

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Checking for 11858 cell barcodes [1] "In Progress:" [1] "Merge Seurat list" Error in validObject(object = .Object) : invalid class "Seurat" object: all assays must have a key #24

Closed Weiming113 closed 1 year ago

Weiming113 commented 1 year ago

Could you please help resolve this issue?

Computing hash Checking for 5432 cell barcodes [1] "Run_04_24h" [1] 165939 11858 Computing hash Checking for 11858 cell barcodes [1] "In Progress:" [1] "Merge Seurat list" Error in validObject(object = .Object) : invalid class "Seurat" object: all assays must have a key

rootze commented 1 year ago

Hello @Weiming113, ideally, when reporting an error, it would be better if you could share which version your Signac, Seurat, and other necessary packages are in.

But as far as I understand, from your error message, this is a Seurat and Signac package version problem. Please see the following issue on https://github.com/satijalab/seurat/issues/7631.