swcarpentry / r-novice-gapminder

R for Reproducible Scientific Analysis
http://swcarpentry.github.io/r-novice-gapminder/
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update 34 packages #864

Closed zkamvar closed 1 year ago

zkamvar commented 1 year ago

I've run the package update manually because the automated workflow was having trouble after the release of {renv} 1.0.0.

This brings in updates to 34 packages. Please wait for the output to run and then check for any new errors, warnings or surprising output changes.

I ran the following commands to update the cache with {renv} 1.0.2

sandpaper::manage_deps()
sandpaper::update_cache()
- 34 packages have updates available.

# CRAN -----------------------------------------------------------------------
- boot          [1.3-28 -> 1.3-28.1]
- bslib         [repo: RSPM -> CRAN; ver: 0.4.2 -> 0.5.1]
- cpp11         [0.4.3 -> 0.4.6]
- DiagrammeR    [1.0.9 -> 1.0.10]
- digest        [repo: RSPM -> CRAN; ver: 0.6.31 -> 0.6.33]
- dplyr         [1.1.2 -> 1.1.3]
- evaluate      [repo: RSPM -> CRAN; ver: 0.20 -> 0.21]
- fontawesome   [0.5.1 -> 0.5.2]
- foreign       [0.8-82 -> 0.8-84]
- fs            [1.6.2 -> 1.6.3]
- ggplot2       [3.4.2 -> 3.4.3]
- gtable        [0.3.3 -> 0.3.4]
- htmltools     [repo: RSPM -> CRAN; ver: 0.5.5 -> 0.5.6]
- igraph        [1.4.2 -> 1.5.1]
- influenceR    [0.1.0.1 -> 0.1.5]
- jsonlite      [repo: RSPM -> CRAN; ver: 1.8.4 -> 1.8.7]
- knitr         [repo: RSPM -> CRAN; ver: 1.42 -> 1.43]
- labeling      [0.4.2 -> 0.4.3]
- MASS          [7.3-59 -> 7.3-60]
- Matrix        [1.5-4 -> 1.6-1]
- mgcv          [1.8-42 -> 1.9-0]
- nlme          [3.1-162 -> 3.1-163]
- purrr         [repo: RSPM -> CRAN; ver: 1.0.1 -> 1.0.2]
- Rcpp          [repo: RSPM -> CRAN; ver: 1.0.10 -> 1.0.11]
- renv          [0.17.3 -> 1.0.2]
- rmarkdown     [2.21 -> 2.24]
- rstudioapi    [0.14 -> 0.15.0]
- sass          [0.4.5 -> 0.4.7]
- survival      [3.5-5 -> 3.5-7]
- tinytex       [0.45 -> 0.46]
- tzdb          [0.3.0 -> 0.4.0]
- vctrs         [0.6.2 -> 0.6.3]
- viridis       [0.6.3 -> 0.6.4]
- xfun          [0.39 -> 0.40]
github-actions[bot] commented 1 year ago

Thank you!

Thank you for your pull request :smiley:

:robot: This automated message can help you check the rendered files in your submission for clarity. If you have any questions, please feel free to open an issue in {sandpaper}.

If you have files that automatically render output (e.g. R Markdown), then you should check for the following:

Rendered Changes

:mag: Inspect the changes: https://github.com/swcarpentry/r-novice-gapminder/compare/md-outputs..md-outputs-PR-864

The following changes were observed in the rendered markdown documents:

 01-rstudio-intro.md |    2 +-
 02-project-intro.md |    2 +-
 03-seeking-help.md  |    4 +-
 config.yaml (gone)  |   96 -----
 md5sum.txt          |   52 +--
 renv.lock (gone)    | 1094 ---------------------------------------------------
 6 files changed, 30 insertions(+), 1220 deletions(-)
What does this mean? If you have source files that require output and figures to be generated (e.g. R Markdown), then it is important to make sure the generated figures and output are reproducible. This output provides a way for you to inspect the output in a diff-friendly manner so that it's easy to see the changes that occur due to new software versions or randomisation.

:stopwatch: Updated at 2023-09-05 14:42:32 +0000

matthieu-bruneaux commented 1 year ago

Thank you for the update @zkamvar!