in caravan/barcodes.py, it appears to only handle the case where you have a single barcode thats unique to a sample. I often have samples that are only identifiable by the unique combination of forward and reverse barcodes. The reverse barcode gets extracted and placed into the header, but the forward barcode is in the forward read itself.
Have you run into this before? Should I code up something to handle forward barcodes?
in caravan/barcodes.py, it appears to only handle the case where you have a single barcode thats unique to a sample. I often have samples that are only identifiable by the unique combination of forward and reverse barcodes. The reverse barcode gets extracted and placed into the header, but the forward barcode is in the forward read itself.
Have you run into this before? Should I code up something to handle forward barcodes?