swolock scrublet issues

swolock / scrublet

Detect doublets in single-cell RNA-seq data

MIT License

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issues

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scrub.scrub_doublets() hangs

#61 obrien-james opened 4 months ago
1
does scrublet work with 10X fixed rna profiling?

#60 tea-egg-sheldon opened 6 months ago
0
Doubets do not occupy distinct states

#59 AAA-3 opened 9 months ago
0
Question normalize_variance

#58 JuliaChristiaanse opened 11 months ago
0
Non-sparse intermediate result causes huge uptick in memory use

#57 yfarjoun closed 1 year ago
1
Scrublet runs into an endless loop

#56 aditinarsale opened 1 year ago
0
Export scrublet plots to .png or .pdf files

#55 DieTANG opened 1 year ago
2
Multiplets after scrublet?

#54 rhlgyb opened 1 year ago
0
Doublet for mixed species

#53 rjg2186 opened 1 year ago
0
pip install error in windows anaconda prompt

#52 archana433 opened 1 year ago
2
Will there be a version compatible with python 3.9?

#51 havu73 opened 1 year ago
0
Illegal instruction core dumped error

#50 PDhingra2016 opened 1 year ago
2
input data with pearson residuals workflow

#49 brainfo opened 2 years ago
2
output file with cell barcodes?

#48 azwainCC opened 2 years ago
0
Number genes value is different

#47 IlianCx opened 2 years ago
0
Potential mistake: percentile vs quantile

#45 iaaka opened 2 years ago
0
The result shows that there is only one double cell, but there are many on umap

#44 ouyangcuihuaa opened 2 years ago
0
pip install error

#43 ulloaa opened 2 years ago
2
How to delete doublets from Seurat object

#42 GreyRockIQ opened 2 years ago
1
Do I use scrublet after doing the standard preprocessing from Seurat?

#41 st4302 opened 2 years ago
1
Error: ValueError: Expected 1D or 2D array, got 0D array instead

#40 TingtingSsl2 opened 2 years ago
1
Threshold setting on non bimodal simulated doublet score distribution

#39 liliay opened 2 years ago
0
Rolling back uninstall of llvmlite

#38 brianpenghe opened 2 years ago
2
Running error with scrub.plot_embedding

#37 lwlive closed 2 years ago
2
ImportError when using scrublet with reticulate (R studio)

#36 liliay closed 2 years ago
0
Scrublet in development atlas

#35 DiracZhu1998 opened 2 years ago
0
scrub_doublets still completes without annoy, nearest neighbor search

#34 RoganGrant opened 2 years ago
2
Installation issue

#33 coralzhang opened 3 years ago
1
import error: file_hash from pooch.util

#32 JustinYeon opened 3 years ago
0
Scrublet disables my figures

#31 ChaseTaylor939 opened 3 years ago
2
How to set the 'expected_doublet_rate' in Scrublet?

#30 victorwang123 opened 3 years ago
1
How to use the results of scrublet?

#29 victorwang123 opened 3 years ago
0
scrublet doesn't work properly

#28 huwenrime opened 3 years ago
1
Can I use the xxx.rds as the input file? Thank you!

#27 loubean4073 opened 3 years ago
0
AttributeError while loading gene list

#26 ishwarvh opened 3 years ago
9
"import scrublet as scr" error

#25 danielcgingerich opened 3 years ago
1
Can't run scrublet successfully with command 'scrub.plot_embedding'

#24 wangjunyu-cumt closed 4 years ago
0
Scrublet takes very long time to run

#23 liron27 opened 4 years ago
1
Segmentation fault when scrub.set_embedding

#22 yingyonghui opened 4 years ago
0
Is there a R version of scrublet on the way?

#21 yingyonghui opened 4 years ago
1
[bug] Plot doublet predictions

#20 paulasoler closed 3 years ago
5
Threshold to call doublets

#19 Jayjay601 opened 4 years ago
0
Memory Error when running scrublet

#18 yeroslaviz closed 4 years ago
2
Providing source populations of doublets for annotated datasets

#17 gokceneraslan closed 4 years ago
2
Unimodal distributions, log transformation, and homogeneous data sets

#16 aaron-allen opened 4 years ago
0
potential cross validation of predicted doublets

#15 MichaelPeibo opened 4 years ago
2
Expected doublet rate question

#14 s849 opened 4 years ago
1
Finding the right threshold for `call_doublets'

#13 paulbrodersen closed 4 years ago
2
Errorn when calculating doublet scores

#12 YiweiNiu closed 4 years ago
2
Which python version did this scrublet used?

#11 Lucyyang1991 closed 4 years ago
1