search

swsoyee / TCC-GUI

📊 Graphical User Interface for TCC package
https://infinityloop.shinyapps.io/TCC-GUI/
MIT License
43 stars 18 forks source link

Another problem during installation #54

Closed domy1980 closed 3 years ago

domy1980 commented 3 years ago

Thank you so much for gcc installation, but I encountered another error...!
I have installed gcc and checked the gfortran. Then I retried the installation of TCC-GUI but, other error happened.

install the package 'DESeq2' failed as below...

Could you tell me how to solve this problem? The spec of my Mac is OS Catalina 10.15.7.

Thanks,

installing to library ‘/private/var/folders/rb/k3gksl7s5yjdct91b2g7dvj00000gn/T/RtmpzsjDrh/renv-staging-f73d10f27eb0’
installing source package ‘DESeq2’ ...
** using staged installation
** libs
clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/private/var/folders/rb/k3gksl7s5yjdct91b2g7dvj00000gn/T/RtmpzsjDrh/renv-staging-f73d10f27eb0/Rcpp/include' -I'/private/var/folders/rb/k3gksl7s5yjdct91b2g7dvj00000gn/T/RtmpzsjDrh/renv-staging-f73d10f27eb0/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -g -O2 -c DESeq2.cpp -o DESeq2.o
In file included from DESeq2.cpp:16:
In file included from /private/var/folders/rb/k3gksl7s5yjdct91b2g7dvj00000gn/T/RtmpzsjDrh/renv-staging-f73d10f27eb0/RcppArmadillo/include/RcppArmadillo.h:31:
In file included from /private/var/folders/rb/k3gksl7s5yjdct91b2g7dvj00000gn/T/RtmpzsjDrh/renv-staging-f73d10f27eb0/RcppArmadillo/include/RcppArmadilloForward.h:49:
In file included from /private/var/folders/rb/k3gksl7s5yjdct91b2g7dvj00000gn/T/RtmpzsjDrh/renv-staging-f73d10f27eb0/RcppArmadillo/include/armadillo:21:
/private/var/folders/rb/k3gksl7s5yjdct91b2g7dvj00000gn/T/RtmpzsjDrh/renv-staging-f73d10f27eb0/RcppArmadillo/include/armadillo_bits/compiler_check.hpp:50:4: error: "*** C++11 compiler required; enable C++11 mode in your compiler, or use an earlier version of Armadillo"
#error "*** C++11 compiler required; enable C++11 mode in your compiler, or use an earlier version of Armadillo"
^
In file included from DESeq2.cpp:16:
In file included from /private/var/folders/rb/k3gksl7s5yjdct91b2g7dvj00000gn/T/RtmpzsjDrh/renv-staging-f73d10f27eb0/RcppArmadillo/include/RcppArmadillo.h:31:
In file included from /private/var/folders/rb/k3gksl7s5yjdct91b2g7dvj00000gn/T/RtmpzsjDrh/renv-staging-f73d10f27eb0/RcppArmadillo/include/RcppArmadilloForward.h:49:
In file included from /private/var/folders/rb/k3gksl7s5yjdct91b2g7dvj00000gn/T/RtmpzsjDrh/renv-staging-f73d10f27eb0/RcppArmadillo/include/armadillo:85:
/private/var/folders/rb/k3gksl7s5yjdct91b2g7dvj00000gn/T/RtmpzsjDrh/renv-staging-f73d10f27eb0/RcppArmadillo/include/armadillo_bits/arma_forward.hpp:149:12: error: unknown type name 'constexpr'
static constexpr bool is_row = false;
^
/private/var/folders/rb/k3gksl7s5yjdct91b2g7dvj00000gn/T/RtmpzsjDrh/renv-staging-f73d10f27eb0/RcppArmadillo/include/armadillo_bits/arma_forward.hpp:150:12: error: unknown type name 'constexpr'
static constexpr bool is_col = false;
^
/private/var/folders/rb/k3gksl7s5yjdct91b2g7dvj00000gn/T/RtmpzsjDrh/renv-staging-f73d10f27eb0/RcppArmadillo/include/armadillo_bits/arma_forward.hpp:151:12: error: unknown type name 'constexpr'
static constexpr bool is_xvec = false;
^
/private/var/folders/rb/k3gksl7s5yjdct91b2g7dvj00000gn/T/RtmpzsjDrh/renv-staging-f73d10f27eb0/RcppArmadillo/include/armadillo_bits/arma_forward.hpp:161:12: error: unknown type name 'constexpr'
static constexpr bool is_row = false;
^
/private/var/folders/rb/k3gksl7s5yjdct91b2g7dvj00000gn/T/RtmpzsjDrh/renv-staging-f73d10f27eb0/RcppArmadillo/include/armadillo_bits/arma_forward.hpp:162:12: error: unknown type name 'constexpr'
static constexpr bool is_col = false;
^
/private/var/folders/rb/k3gksl7s5yjdct91b2g7dvj00000gn/T/RtmpzsjDrh/renv-staging-f73d10f27eb0/RcppArmadillo/include/armadillo_bits/arma_forward.hpp:163:12: error: unknown type name 'constexpr'
static constexpr bool is_xvec = true;
^
/private/var/folders/rb/k3gksl7s5yjdct91b2g7dvj00000gn/T/RtmpzsjDrh/renv-staging-f73d10f27eb0/RcppArmadillo/include/armadillo_bits/arma_forward.hpp:173:12: error: unknown type name 'constexpr'
static constexpr bool is_row = false;
^
/private/var/folders/rb/k3gksl7s5yjdct91b2g7dvj00000gn/T/RtmpzsjDrh/renv-staging-f73d10f27eb0/RcppArmadillo/include/armadillo_bits/arma_forward.hpp:174:12: error: unknown type name 'constexpr'
static constexpr bool is_col = true;
^
/private/var/folders/rb/k3gksl7s5yjdct91b2g7dvj00000gn/T/RtmpzsjDrh/renv-staging-f73d10f27eb0/RcppArmadillo/include/armadillo_bits/arma_forward.hpp:175:12: error: unknown type name 'constexpr'
static constexpr bool is_xvec = false;
^
/private/var/folders/rb/k3gksl7s5yjdct91b2g7dvj00000gn/T/RtmpzsjDrh/renv-staging-f73d10f27eb0/RcppArmadillo/include/armadillo_bits/arma_forward.hpp:185:12: error: unknown type name 'constexpr'
static constexpr bool is_row = true;
^
/private/var/folders/rb/k3gksl7s5yjdct91b2g7dvj00000gn/T/RtmpzsjDrh/renv-staging-f73d10f27eb0/RcppArmadillo/include/armadillo_bits/arma_forward.hpp:186:12: error: unknown type name 'constexpr'
static constexpr bool is_col = false;
^
/private/var/folders/rb/k3gksl7s5yjdct91b2g7dvj00000gn/T/RtmpzsjDrh/renv-staging-f73d10f27eb0/RcppArmadillo/include/armadillo_bits/arma_forward.hpp:187:12: error: unknown type name 'constexpr'
static constexpr bool is_xvec = false;
^
/private/var/folders/rb/k3gksl7s5yjdct91b2g7dvj00000gn/T/RtmpzsjDrh/renv-staging-f73d10f27eb0/RcppArmadillo/include/armadillo_bits/arma_forward.hpp:197:12: error: unknown type name 'constexpr'
static constexpr bool is_row = T1::is_row;
^
/private/var/folders/rb/k3gksl7s5yjdct91b2g7dvj00000gn/T/RtmpzsjDrh/renv-staging-f73d10f27eb0/RcppArmadillo/include/armadillo_bits/arma_forward.hpp:198:12: error: unknown type name 'constexpr'
static constexpr bool is_col = T1::is_col;
^
/private/var/folders/rb/k3gksl7s5yjdct91b2g7dvj00000gn/T/RtmpzsjDrh/renv-staging-f73d10f27eb0/RcppArmadillo/include/armadillo_bits/arma_forward.hpp:199:12: error: unknown type name 'constexpr'
static constexpr bool is_xvec = T1::is_xvec;
^
/private/var/folders/rb/k3gksl7s5yjdct91b2g7dvj00000gn/T/RtmpzsjDrh/renv-staging-f73d10f27eb0/RcppArmadillo/include/armadillo_bits/arma_forward.hpp:209:12: error: unknown type name 'constexpr'
static constexpr bool is_row = false;
^
/private/var/folders/rb/k3gksl7s5yjdct91b2g7dvj00000gn/T/RtmpzsjDrh/renv-staging-f73d10f27eb0/RcppArmadillo/include/armadillo_bits/arma_forward.hpp:210:12: error: unknown type name 'constexpr'
static constexpr bool is_col = false;
^
/private/var/folders/rb/k3gksl7s5yjdct91b2g7dvj00000gn/T/RtmpzsjDrh/renv-staging-f73d10f27eb0/RcppArmadillo/include/armadillo_bits/arma_forward.hpp:211:12: error: unknown type name 'constexpr'
static constexpr bool is_xvec = false;
^
fatal error: too many errors emitted, stopping now [-ferror-limit=]
20 errors generated.
make: *** [DESeq2.o] Error 1
ERROR: compilation failed for package ‘DESeq2’
removing ‘/private/var/folders/rb/k3gksl7s5yjdct91b2g7dvj00000gn/T/RtmpzsjDrh/renv-staging-f73d10f27eb0/DESeq2’
エラー: install of package 'DESeq2' failed
swsoyee commented 3 years ago

Please check this issue https://github.com/scottzijiezhang/RADAR/issues/13, it may be helpful.

swsoyee commented 3 years ago

Since there is no active discussion I will close this issue. Feel free to reopen it if the question have not been solved.