:ballot_box_with_check: implemented
:x: skipped
:construction: working on it
:large_orange_diamond: next version, high priority
:large_blue_diamond: next version, low priority
Scripts
add script to check for dependencies :large_orange_diamond:
workflows for installing PLINK2, VEGAS2 and MAGMA properly :large_blue_diamond:
add in HapMap2 as reference (VEGAS2 only) :large_blue_diamond:
add in download and parsing script for reference to enable per-chromosome analyses :large_blue_diamond:
add in VEGAS2 based pathway enrichment analysis :construction:
extent resource script with download of functional elements, to facilitate the analysis of transcription binding sites, or active enhancers, etc. :large_orange_diamond:
Plotting
add (option) to plot results in a Manhattan :large_orange_diamond:
add (option) to plot results in a QQ-plot :large_orange_diamond:
add gene-names based on a threshold to Manhattan :large_blue_diamond:
add option to plot regional plots of significant genes :large_blue_diamond:
Things to do for future versions
:ballot_box_with_check: implemented :x: skipped :construction: working on it :large_orange_diamond: next version, high priority :large_blue_diamond: next version, low priority
Scripts
Plotting