swvanderlaan / MetaGWASToolKit

A ToolKit to perform a Meta-analysis of Genome-Wide Association Studies
https://swvanderlaan.github.io/MetaGWASToolKit/
MIT License
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Add proper 1000G phase 3 #2

Closed swvanderlaan closed 1 year ago

swvanderlaan commented 6 years ago

We can also add in 1000G phase 1 and phase 3 via 1000 Genomes website's original VCFs. These should be converted to PLINK PED-files, and subsequently binary files.

Check out:

http://www.internationalgenome.org/faq/can-i-convert-vcf-files-plinkped-format/

swvanderlaan commented 1 year ago

1000G is now fully supported with the following super-populations:

The appropriate PLINK-formatted binary files are made, including the .INFO.txt.gz, .FREQ.txt.gz, and the .FUNC.txt.gz files.