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sybila / biodivine-boolean-models

A collection of 230+ Boolean networks from various sources useful for benchmarking or testing.
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[Database/Generator] #36

Open daemontus opened 2 years ago

daemontus commented 2 years ago

There is a relatively new method aimed at transforming classical "continuous" SBML models into Boolean networks. Parts of the underlying approach can be seen here (also see this).

The method has been successfully applied to a wide range of models from the Biomodels repository. The translation result is not published, but the code is publicly available here.

If someone can make the code run it should be possible to add these as a large collection of automatically generated models.

pauleve commented 2 years ago

You may also consider the CaSQ method https://github.com/soli/casq for structural conversion from CellDesignermodels to Boolean networks. It is shipped in the CoLoMoTo notebook.