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sybila / biodivine-boolean-models

A collection of 230+ Boolean networks from various sources useful for benchmarking or testing.
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[Model] Nature communications 10.1 (2019) #47

Open daemontus opened 2 years ago

daemontus commented 2 years ago

Münzner, Ulrike, Edda Klipp, and Marcus Krantz. "A comprehensive, mechanistically detailed, and executable model of the cell division cycle in Saccharomyces cerevisiae." Nature communications 10.1 (2019): 1-12.

A very large model (3000+ variables), plus the functions are quite problematic to handle.

daemontus commented 2 years ago

At the moment, our static analysis can't really handle this model. Technically, it should finish in several hours given sufficient RAM (~100GB), but a significant technical improvement is necessary before we can include this model without problems. This is currently being worked on here.