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syntheke / bayesR

Bayesian hierarchical model for complex trait analysis
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fam file #16

Closed rcheng closed 2 years ago

rcheng commented 2 years ago

There seem to be two problems regarding the fam file

forrtl: severe (24): end-of-file during read, unit -5, file Internal List-Directed Read Image PC Routine Line Source
bayesR 0000000000432F0E Unknown Unknown Unknown bayesR 00000000004594BD Unknown Unknown Unknown bayesR 0000000000457C26 Unknown Unknown Unknown bayesR 0000000000413E78 Unknown Unknown Unknown bayesR 000000000042AE53 Unknown Unknown Unknown bayesR 000000000040309E Unknown Unknown Unknown libc-2.17.so 00002B8555068555 __libc_start_main Unknown Unknown bayesR 0000000000402FA9 Unknown Unknown Unknown

syntheke commented 2 years ago

Easy to fix.

  1. Don't use tab
  2. Split your traits over several runs
rcheng commented 2 years ago

Sure.

I figured those out and made changes but it took me lots of time to debug. In addition, one may need to make copies of some data if files of the plink format are used and jobs are run in parallel.