No observations when using CHF module

SamiVeemed commented 2 years ago

What happened?

Hi, I tried using synthea and create data for few patients without giving any other input, I got vitals and other information in observations.csv But when I tried using Congestive Heart Failure module for 3 patients, it gave me weird values in observations file and alot of other files are empty Attached here is the output for observations.csv when I ran CHF module

observations.csv

Can you tell what is wrong if I just want to have patients data created for only just 1 type of module. What I need is to have vitals like heart rate, BP, SpO2 etc

Environment

- OS: windows 10 19044.1645
- Java: 1.8 openjdk

Relevant log output

PS C:\Users\MuhammadSami\Documents\GitHub\synthea> ./run_synthea  -m congestive_heart_failure  -p 3   

> Task :run
Scanned 72 modules and 76 submodules.
Loading submodule modules\breast_cancer\tnm_diagnosis.json
Loading submodule modules\encounter\anxiety_screening.json
Loading submodule modules\covid19\nonsurvivor_lab_values.json
Loading submodule modules\covid19\outcomes.json
Loading submodule modules\covid19\survivor_lab_values.json
Loading submodule modules\covid19\diagnose_blood_clot.json
Loading submodule modules\dermatitis\moderate_cd_obs.json 
Loading submodule modules\dermatitis\severe_cd_obs.json   
Loading submodule modules\contraceptives\female_sterilization.json
Loading submodule modules\allergies\outgrow_env_allergies.json    
Loading submodule modules\covid19\medications.json                
Loading submodule modules\encounter\vitals.json                     
Loading submodule modules\heart\chf_meds.json                       
Loading submodule modules\lung_cancer\lung_cancer_probabilities.json
Loading submodule modules\contraceptives\patch_contraceptive.json
Loading submodule modules\heart\chf_lvad.json                    
Loading submodule modules\allergies\allergy_panel.json           
Loading submodule modules\covid19\supplies_hospitalization.json
Loading submodule modules\breast_cancer\surgery_therapy_breast.json
Loading submodule modules\allergies\severe_allergic_reaction.json
Loading submodule modules\covid19\supplies_intubation.json       
Loading submodule modules\covid19\infection.json                 
Loading submodule modules\dermatitis\early_severe_eczema_obs.json
Loading submodule modules\total_joint_replacement\functional_status_assessments.json
Loading submodule modules\encounter\depression_screening.json
Loading submodule modules\snf\skilled_nursing_facility.json
Loading submodule modules\weight_loss\mend_week.json            
Loading submodule modules\heart\chf_lab_work.json               
Loading submodule modules\contraceptives\ring_contraceptive.json
Loading submodule modules\covid19\end_symptoms.json
Loading submodule modules\covid19\diagnose_bacterial_infection.json
Loading submodule modules\anemia\anemia_sub.json                   
Loading submodule modules\encounter\substance_use_screening.json   
Loading submodule modules\heart\chf_transplant.json
Loading submodule modules\medications\otc_pain_reliever.json
Loading submodule modules\breast_cancer\hormone_diagnosis.json
Loading submodule modules\allergies\drug_allergy_incidence.json
Loading submodule modules\covid19\supplies_icu.json                   
Loading submodule modules\medications\ear_infection_antibiotic.json   
Loading submodule modules\medications\strong_opioid_pain_reliever.json
Loading submodule modules\allergies\immunotherapy.json
Loading submodule modules\encounter\sdoh_hrsn.json
Loading submodule modules\dermatitis\mid_moderate_eczema_obs.json
Loading submodule modules\contraceptives\clear_contraceptive.json
Loading submodule modules\covid19\end_outcomes.json              
Loading submodule modules\heart\chf_meds_hfmef.json
Loading submodule modules\heart\chf_nyha_panel.json
Loading submodule modules\surgery\general_anesthesia.json
Loading submodule modules\veterans\veteran_suicide_probabilities.json   
Loading submodule modules\contraceptives\oral_contraceptive.json        
Loading submodule modules\medications\moderate_opioid_pain_reliever.json
Loading submodule modules\covid19\measurements_vitals.json
Loading submodule modules\medications\otc_antihistamine.json
Loading submodule modules\covid19\determine_risk.json       
Loading Lookup Table: covid-19-severity-outcomes.csv        
Loading Lookup Table: covid-19-survival-outcomes.csv
Loading submodule modules\covid19\admission.json
Loading submodule modules\allergies\environmental_allergy_incidence.json
Loading submodule modules\covid19\measurements_frequent.json   
Loading submodule modules\allergies\food_allergy_incidence.json
Loading submodule modules\dermatitis\mid_severe_eczema_obs.json
Loading submodule modules\covid19\symptoms.json
Loading submodule modules\dermatitis\early_moderate_eczema_obs.json
Loading submodule modules\contraceptives\intrauterine_device.json  
Loading submodule modules\encounter\hark_screening.json            
Loading submodule modules\contraceptives\male_sterilization.json
Loading submodule modules\heart\chf_meds_hfref_nyha3.json
Loading submodule modules\contraceptives\implant_contraceptive.json
Loading submodule modules\heart\chf_meds_hfref_nyha4.json
Loading submodule modules\breast_cancer\hormonetherapy_breast.json
Loading submodule modules\heart\chf_meds_hfref_nyha2.json
Loading submodule modules\encounter\fall_risk_screening.json          
Loading submodule modules\contraceptives\injectable_contraceptive.json
Loading submodule modules\covid19\measurements_daily.json             
Loading submodule modules\covid19\treat_blood_clot.json
Loading submodule modules\medications\hypertension_medication.json
Loading submodule modules\allergies\outgrow_food_allergies.json
Loading submodule modules\breast_cancer\chemotherapy_breast.json
Loading module modules\congestive_heart_failure.json
Running with options:
Population: 3
Seed: 1652335002961
Provider Seed:1652335002961
Reference Time: 1652335002961
Location: Massachusetts
Min Age: 0
Max Age: 140
Modules: Congestive Heart Failure Module
       > [1 loaded]
2 -- Miguel815 Donnelly343 (10 y/o M) Holyoke, Massachusetts
1 -- Meredith572 Will178 (24 y/o F) Amherst, Massachusetts
3 -- Luciana251 Sanford861 (42 y/o F) Framingham, Massachusetts
Records: total=3, alive=3, dead=0

BUILD SUCCESSFUL in 19s
4 actionable tasks: 2 executed, 2 up-to-date

jawalonoski commented 2 years ago

This is not a bug.

Please review this wiki article: https://github.com/synthetichealth/synthea/wiki/The--M-Feature

jawalonoski commented 2 years ago

You may wish to create a Keep Module specifying CHF.

Please see https://github.com/synthetichealth/synthea/wiki/Keep-Patients-Module

synthetichealth / synthea