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synthetichealth / synthea

Synthetic Patient Population Simulator
https://synthetichealth.github.io/synthea
Apache License 2.0
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observations missing encounters #717

Open jtktam opened 4 years ago

jtktam commented 4 years ago

I have generated a 25k sized data set and there are some observations that has no encounters, according to the docs the encounter is a required field?

2012-09-11T12:02:04Z,803f0236-405d-4e82-a8d6-dbdcda1768be,,QALY,QALY,-0.0,a,numeric 2013-09-11T12:02:04Z,803f0236-405d-4e82-a8d6-dbdcda1768be,,QALY,QALY,-0.0,a,numeric 2014-09-11T12:02:04Z,803f0236-405d-4e82-a8d6-dbdcda1768be,,QALY,QALY,0.9,a,numeric 2015-09-11T12:02:04Z,803f0236-405d-4e82-a8d6-dbdcda1768be,,QALY,QALY,1.8,a,numeric 2016-09-11T12:02:04Z,803f0236-405d-4e82-a8d6-dbdcda1768be,,QALY,QALY,2.7,a,numeric 2017-09-11T12:02:04Z,803f0236-405d-4e82-a8d6-dbdcda1768be,,QALY,QALY,3.6,a,numeric 2018-09-11T12:02:04Z,803f0236-405d-4e82-a8d6-dbdcda1768be,,QALY,QALY,4.5,a,numeric 2019-09-11T12:02:04Z,803f0236-405d-4e82-a8d6-dbdcda1768be,,QALY,QALY,5.3,a,numeric 2012-09-11T12:02:04Z,803f0236-405d-4e82-a8d6-dbdcda1768be,,DALY,DALY,0.0,a,numeric 2013-09-11T12:02:04Z,803f0236-405d-4e82-a8d6-dbdcda1768be,,DALY,DALY,0.0,a,numeric 2014-09-11T12:02:04Z,803f0236-405d-4e82-a8d6-dbdcda1768be,,DALY,DALY,0.1,a,numeric 2015-09-11T12:02:04Z,803f0236-405d-4e82-a8d6-dbdcda1768be,,DALY,DALY,0.2,a,numeric 2016-09-11T12:02:04Z,803f0236-405d-4e82-a8d6-dbdcda1768be,,DALY,DALY,0.3,a,numeric 2017-09-11T12:02:04Z,803f0236-405d-4e82-a8d6-dbdcda1768be,,DALY,DALY,0.4,a,numeric 2018-09-11T12:02:04Z,803f0236-405d-4e82-a8d6-dbdcda1768be,,DALY,DALY,0.5,a,numeric 2019-09-11T12:02:04Z,803f0236-405d-4e82-a8d6-dbdcda1768be,,DALY,DALY,0.7,a,numeric 2012-09-11T12:02:04Z,803f0236-405d-4e82-a8d6-dbdcda1768be,,QOLS,QOLS,1.0,{score},numeric 2013-09-11T12:02:04Z,803f0236-405d-4e82-a8d6-dbdcda1768be,,QOLS,QOLS,1.0,{score},numeric 2014-09-11T12:02:04Z,803f0236-405d-4e82-a8d6-dbdcda1768be,,QOLS,QOLS,0.9,{score},numeric 2015-09-11T12:02:04Z,803f0236-405d-4e82-a8d6-dbdcda1768be,,QOLS,QOLS,0.9,{score},numeric 2016-09-11T12:02:04Z,803f0236-405d-4e82-a8d6-dbdcda1768be,,QOLS,QOLS,0.9,{score},numeric 2017-09-11T12:02:04Z,803f0236-405d-4e82-a8d6-dbdcda1768be,,QOLS,QOLS,0.9,{score},numeric 2018-09-11T12:02:04Z,803f0236-405d-4e82-a8d6-dbdcda1768be,,QOLS,QOLS,0.9,{score},numeric 2019-09-11T12:02:04Z,803f0236-405d-4e82-a8d6-dbdcda1768be,,QOLS,QOLS,0.8,{score},numeric

asim29 commented 4 years ago

I've been facing this issue as well. Was anyone able to figure out what's going on?

dehall commented 3 years ago

Hi, apologies for not noticing this issue sooner. These observations you noticed here are special in that they aren't intended to represent actual observations in the context of a patient's medical care, these are post-generation calculated measures of disease burden: Quality-Adjusted Life Years (QALY), Disability-Adjusted Life Years (DALY), and Quality of Life Scale (QOLS). Because they aren't "real" observations, there isn't a real encounter to link them to. Let us know if this is still an issue, maybe we should consider a config setting to enable/disable exporting these special observations.