sys-bio libOmexMeta issues

sys-bio / libOmexMeta

libOmexMeta is a library aimed at providing developer-level support for reading, writing, editing and managing semantic annotations for biosimulation models.

https://sys-bio.github.io/libOmexMeta/

Apache License 2.0

8 stars 6 forks source link

issues

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need python 3.12 release

#148 fbergmann opened 1 week ago
1
Exemplar demonstration web interface for COMBINE archive annotations

#147 nickerso opened 1 year ago
0
Support notes from SBML models

#146 nickerso opened 1 year ago
0
Extend supported model formats to include CellML 2.0

#145 nickerso opened 1 year ago
0
Merge back to develop

#144 luciansmith closed 1 year ago
0
Merge old changes from develop

#143 luciansmith closed 1 year ago
0
Add support for python 3.11

#142 matthiaskoenig closed 1 year ago
1
Update to build for Python 3.10

#141 luciansmith closed 1 year ago
0
Add support for python 3.10

#140 bilalshaikh42 closed 1 year ago
4
Segmentation fault/Exception error

#139 luciansmith opened 2 years ago
2
Automatically creating `http://omex-library.org/NewOmex.omex` URIs is likely to generate confusion

#138 jonrkarr opened 2 years ago
0
No support for MacOS 10.14

#137 matthiaskoenig closed 1 year ago
2
pxOmexMeta hangs on SBML-fbc models

#136 jonrkarr opened 3 years ago
0
Align XML version between `RDF.to_file` and `RDF.from_file`

#135 jonrkarr opened 3 years ago
2
Iteration over new Logger data structure crashes with segmentation faults

#134 jonrkarr opened 3 years ago
0
Align the error codes printed to log console/files with the attribute names in `eLogLevel`

#133 jonrkarr opened 3 years ago
0
Provide ability to temporarily configure the logger

#132 jonrkarr opened 3 years ago
0
Develop

#131 CiaranWelsh closed 3 years ago
0
Turn Logger into a container for storing issues that can be returned to user

#130 CiaranWelsh closed 3 years ago
2
Think about exposing lower level interface (LibrdfUri, LibrdfNode, LibrdfStatement) to Python. Maybe best to use Swig?

#129 CiaranWelsh opened 3 years ago
0
File Logger not working as expected

#128 CiaranWelsh opened 3 years ago
9
RDF `__eq__` method (`equals_rdf_vs_rdf`) should support non-RDF objects

#127 jonrkarr opened 3 years ago
0
add option to unzip in windows ci doxygen install to enable overwrite

#126 CiaranWelsh closed 3 years ago
0
Develop

#125 CiaranWelsh closed 3 years ago
0
increment version

#124 CiaranWelsh closed 3 years ago
0
Develop

#123 CiaranWelsh closed 3 years ago
0
bug fix with logging. Returns 1 not 0 so default logger does not take…

#122 CiaranWelsh closed 3 years ago
0
Merge logging changes

#121 CiaranWelsh closed 3 years ago
0
Merge logging changes

#120 CiaranWelsh closed 3 years ago
0
Develop merge master

#119 CiaranWelsh closed 3 years ago
0
Fixed releases link

#118 jonrkarr closed 3 years ago
0
Merge logging branch into develop

#117 CiaranWelsh closed 3 years ago
0
Spec update

#116 CiaranWelsh closed 3 years ago
0
Spec update

#115 CiaranWelsh closed 3 years ago
0
Add a "Model Level Annotations" section to the documentation

#114 CiaranWelsh opened 3 years ago
0
pyomexmeta fails on 1% of SBML files from BioModels

#113 jonrkarr opened 3 years ago
5
Changes in spec: 4 of four

#112 jhgennari closed 3 years ago
2
Changes in spec: 3 of four

#111 jhgennari closed 3 years ago
1
Changes in spec: 2 of four

#110 jhgennari closed 3 years ago
1
Changes in spec: 1 of four

#109 jhgennari closed 3 years ago
1
Automate testing of examples to avoid accumulating broken examples

#108 jonrkarr closed 3 years ago
1
Semantic extraction from SBML fails with segmentation faults for example models

#107 jonrkarr opened 3 years ago
4
Some SBML examples have invalid metaids (according to libSBML)

#106 jonrkarr closed 3 years ago
1
Update example of `to_editor` to current arguments

#105 jonrkarr closed 3 years ago
1
Provide ability to get error messages for failures with `pyomexmeta.pyomexmeta.Editor.get_xml`

#104 jonrkarr opened 3 years ago
0
Provide ability to copy examples in documentation without line numbers

#103 jonrkarr closed 3 years ago
1
Provide ability to get error messages for failures with `RDF.to_file`

#102 jonrkarr opened 3 years ago
7
Validate that namespace URIs have trailing `#` or `/`

#101 jonrkarr opened 3 years ago
2
Use version suffix with `omexManifest/content@format`

#100 jonrkarr opened 3 years ago
2
What values are intended to be used for `omexManifest/content@format`?

#99 jonrkarr opened 3 years ago
3