Closed 0u812 closed 8 years ago
The model below only produces one output row when variableStep=False is passed to simulate but the number of steps is not specified.
variableStep=False
simulate
from __future__ import print_function, division import tellurium as te import roadrunner from roadrunner import SelectionRecord print(roadrunner.__version__) # Model definition via antimony. # The model contains an Event triggered at t=2 [s]. r = te.loada(""" model event_time() // Reactions J0: $PP_S -> 2 S3; K1 * PP_S; // Species initializations: var species S3; var species S4; S3 = 0.5; PP_S = 0.0; S4 := 2*S3; // Rule for S1 K1 = 0.5; // Additional events for triggering re-integration E1: at(time>=2): S3=5; end """) r.selections = ['time'] + r.model.getBoundarySpeciesIds() + r.model.getFloatingSpeciesIds() + r.model.getReactionIds() print(r.selections) absTol = 1E-6 * min(r.model.getCompartmentVolumes()) relTol = 1E-6 s = r.simulate(0, 7, absolute=absTol, relative=relTol, variableStep=False, stiff=False, plot=True) print(r) print(s)
I've removed the ability to pass variableStep to the simulate method. It should only be specified via the solver API.
variableStep
The model below only produces one output row when
variableStep=False
is passed tosimulate
but the number of steps is not specified.