tellurium notebook `name cwd not defined` when loading COMBINE archive

sys-bio / tellurium

Python Environment for Modeling and Simulating Biological Systems

http://tellurium.analogmachine.org/

Apache License 2.0

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tellurium notebook `name cwd not defined` when loading COMBINE archive #307

Closed matthiaskoenig closed 6 years ago

matthiaskoenig commented 6 years ago

When trying to import the following COMBINE archive https://sed-ml.github.io/examples/L1V3/L1V3_repressilator.omex in tellurium notebook on Ubuntu I get

ERROR IMPORTING ARCHIVE
`name cwd not defined`

0u812 commented 6 years ago

Thanks for catching this. Fixed in 2.0.12. You can do an in-place upgrade with ~/.config/Tellurium/telocal/python-3.6.3/bin/python3 -m pip upgrade tellurium. No need to reinstall the entire notebook.