sys-bio / tellurium

Python Environment for Modeling and Simulating Biological Systems
http://tellurium.analogmachine.org/
Apache License 2.0
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Installation Problem with Python3.6 #448

Open Cerasys opened 4 years ago

Cerasys commented 4 years ago

When trying to run pip install tellurium I keep getting a non-deterministic error stating that one of the following packages is missing/cannot be found: phrasedm1, antimony, tesedml

& C:/Users/Nathan/AppData/Local/Programs/Python/Python36-32/Scripts/pip install tellurium Collecting tellurium Using cached tellurium-2.1.5-py2.py3-none-any.whl (110 kB) Requirement already satisfied: numpy>=1.11.0 in c:\users\nathan\appdata\local\programs\python\python36-32\lib\site-packages (from tellurium) (1.18.1) Requirement already satisfied: scipy>=0.19.0 in c:\users\nathan\appdata\roaming\python\python36\site-packages (from tellurium) (1.4.1) Requirement already satisfied: ipykernel>=4.6.1 in c:\users\nathan\appdata\roaming\python\python36\site-packages (from tellurium) (5.1.4) Requirement already satisfied: jupyter-client>=5.1.0 in c:\users\nathan\appdata\roaming\python\python36\site-packages (from tellurium) (5.3.4) Collecting rrplugins>=1.1.8 Using cached rrplugins-1.2.2-py2.py3-none-any.whl (25 kB) ERROR: Could not find a version that satisfies the requirement phrasedml>=1.0.9 (from tellurium) (from versions: none) ERROR: No matching distribution found for phrasedml>=1.0.9 (from tellurium)

Another instance: C:/Users/Nathan/AppData/Local/Programs/Python/Python36-32/Scripts/pip install tellurium Collecting tellurium Using cached tellurium-2.1.5-py2.py3-none-any.whl (110 kB) Collecting requests Using cached requests-2.23.0-py2.py3-none-any.whl (58 kB) ERROR: Could not find a version that satisfies the requirement tesedml>=0.4.3 (from tellurium) (from versions: none) ERROR: No matching distribution found for tesedml>=0.4.3 (from tellurium)

Would appreciate some help.. Thanks!

hsauro commented 4 years ago

Could someone try to answer this query?

Herbert

On Mon, Mar 9, 2020 at 12:31 PM Cerasys notifications@github.com wrote:

When trying to run pip install tellurium I keep getting a non-deterministic error stating that one of the following packages is missing/cannot be found: phrasedm1, antimony, tesedml

& C:/Users/Nathan/AppData/Local/Programs/Python/Python36-32/Scripts/pip install tellurium Collecting tellurium Using cached tellurium-2.1.5-py2.py3-none-any.whl (110 kB) Requirement already satisfied: numpy>=1.11.0 in c:\users\nathan\appdata\local\programs\python\python36-32\lib\site-packages (from tellurium) (1.18.1) Requirement already satisfied: scipy>=0.19.0 in c:\users\nathan\appdata\roaming\python\python36\site-packages (from tellurium) (1.4.1) Requirement already satisfied: ipykernel>=4.6.1 in c:\users\nathan\appdata\roaming\python\python36\site-packages (from tellurium) (5.1.4) Requirement already satisfied: jupyter-client>=5.1.0 in c:\users\nathan\appdata\roaming\python\python36\site-packages (from tellurium) (5.3.4) Collecting rrplugins>=1.1.8 Using cached rrplugins-1.2.2-py2.py3-none-any.whl (25 kB) ERROR: Could not find a version that satisfies the requirement phrasedml>=1.0.9 (from tellurium) (from versions: none) ERROR: No matching distribution found for phrasedml>=1.0.9 (from tellurium)

Another instance: C:/Users/Nathan/AppData/Local/Programs/Python/Python36-32/Scripts/pip install tellurium Collecting tellurium Using cached tellurium-2.1.5-py2.py3-none-any.whl (110 kB) Collecting requests Using cached requests-2.23.0-py2.py3-none-any.whl (58 kB) ERROR: Could not find a version that satisfies the requirement tesedml>=0.4.3 (from tellurium) (from versions: none) ERROR: No matching distribution found for tesedml>=0.4.3 (from tellurium)

Would appreciate some help.. Thanks!

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Cerasys commented 4 years ago

I ended up using conda to install and that worked. However this is still a bug for the basic python 3.6 package

hsauro commented 4 years ago

We’ve started on revamping the installation process because at the moment it fail about 1 out of 100 on the Mac platform.

Herbert

kirichoi commented 4 years ago

Are you using 32 bit Python by any chance? I believe Tellurium does not support 32 bit Python anymore.