Open layal-khayal opened 2 years ago
@layal-khayal a fix around this for me (without touching the code) was to install any missing packages manually (from toinstall
see below) so that the call to source biocLite.R
isn't made:
From expBATCH.R
:
installed<-installed.packages()[,1]
required<-c("mvtnorm","mclust","sva","stats","ggplot2","RColorBrewer",
"rARPACK","RcppArmadillo","RcppEigen","Rcpp","parallel",
"foreach","doParallel","doMC","compiler","devtools")
toinstall<-required[!(required %in% installed)]
if(length(toinstall) != 0){
source("https://bioconductor.org/biocLite.R")
biocLite(toinstall)
}
Error: With R version 3.5 or greater, install Bioconductor packages using BiocManager; see https://bioconductor.org/install.
Can you please fix it ?