Unable to find how the bag of instances are created

szc19990412 / TransMIL

TransMIL: Transformer based Correlated Multiple Instance Learning for Whole Slide Image Classification

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Unable to find how the bag of instances are created #9

Closed rushin682 closed 1 year ago

rushin682 commented 2 years ago

Hi,

Thanks for the good work and repo. Could you please advise me on how are the bags of features embedding created in the code? If I understand correctly, the {slide_id}.pt file contains the feature embedding of all patches from the slide. Please let me know if I'm missing something.

Thanks once again for the repo.

szc19990412 commented 2 years ago

Hi, we use CLAM's WSI processing solution (https://github.com/mahmoodlab/CLAM), hope this can help you