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szhan / onekg_analysis

Evaluation of genotype imputation methods using the unified genealogy dataset
MIT License
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Compare imputation performance using tskit.lshmm and BEAGLE #1

Closed szhan closed 1 year ago

szhan commented 1 year ago

Analyses to identify an example where imputed genotypes are clearly different between tskit.lshmm and BEAGLE. This will help further refinement of tskit.lshmm.

szhan commented 1 year ago

See also #4

szhan commented 1 year ago

Merging this for now, but the results comparing lshmm and truth don't make sense.

szhan commented 1 year ago

Addresses #6