szhan / tsimpute

Genome-wide genotype imputation using tree sequences.
MIT License
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Append a bunch of sample edges at once to an existing tree sequence #140

Closed szhan closed 1 year ago

szhan commented 1 year ago

Calling add_individual_to_tree_sequence and adding one individual at a time is far too slow. It is much faster and more efficient to prepare all the edge data and then call append_columns.