ERROR: Failed to open popfile.txt for reading

[James-S-Santangelo]

Hello,

I'm trying to run lassi using the following command:

lassip --vcf Chr05_Occ_Urban_whatshapPhased_shapeitPhased.vcf.gz --hapstats --salti --winsize 201 --winstep 100 --threads 2 --pop popfile.txt --out Chr05_Occ_Urban_salti_test

However, I'm receiving the following error:

ERROR: Failed to open popfile.txt for reading.
terminate called after throwing an instance of 'int'

I've tried changing the delimiter in the popfile and removing underscores in sample names but receive the same error each time. Any idea what might be happening?

Here is the popfile:

popfile.txt

Thanks! James

[James-S-Santangelo]

Of course I solved the issue two seconds later and it was all my fault to begin with 😅