Having an issue running selscan

[AsmaAllouch]

Hi, I'm trying to run the selscan, indeed im getting this ERROR: Alleles must be coded 0/1 only. I have changed the coding of data to be 0/1 using plink, but indeed im still getting the same error. These screenshots shows the error and my data in as TPED.

Any suggestion on what can be the error and how can I fix it

[szpiech]

Hello,

Well, if you can send me an example file that gives this error I can try to look at what’s going on.

Zachary

Le dim. 22 sept. 2024 à 07:36, AsmaAllouch @.***> a écrit :

Hi, I'm trying to run the selscan, indeed im getting this ERROR: Alleles must be coded 0/1 only. I have changed the coding of data to be 0/1 using plink, but indeed im still getting the same error. Screenshot.2024-09-22.at.2.34.22.PM.png (view on web) https://github.com/user-attachments/assets/6d3bf550-1fb5-446a-ada9-acea642eeef2 Screenshot.2024-09-22.at.2.34.50.PM.png (view on web) https://github.com/user-attachments/assets/b58fcaff-22f5-43d3-ab10-9c4e8e265e7f These screenshots shows the error and my data in as TPED.

Any suggestion on what can be the error and how can I fix it

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[AsmaAllouch]

Hey Since it is .tped file, I cannot attach it here. I have sent it to you through this email szpiech@psu.edu

Please let me know. Thank You